Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_E22
(876 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 33 0.040
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.093
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 1.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.0
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.7
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 4.6
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.5 bits (73), Expect = 0.040
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +3
Query: 717 PPXXPXXXPPPPXXXXXXXPPPXXPPXPXP 806
PP P PPPP PP PP P P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +3
Query: 717 PPXXPXXXPPPPXXXXXXXPPPXXPPXP 800
PP PPPP PPP PP P
Sbjct: 1699 PPQMSAPTPPPPPMSVP--PPPSAPPMP 1724
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/45 (31%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
Frame = +1
Query: 745 PPXXXXXPXXPPPXXP-PXPPPXXXXXXPXXXXXPXXXXXXPPPP 876
PP P P P PPP P P PPPP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 32.3 bits (70), Expect = 0.093
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 717 PPXXPXXXPPPPXXXXXXXPPPXXPP 794
PP P PPPP PPP PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 29.1 bits (62), Expect = 0.87
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 729 PXXXPPPPXXXXXXXPPPXXPPXPXP 806
P PPPP PP PP P P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +1
Query: 745 PPXXXXXPXXPPPXXPPXPPP 807
PP P PP PP PPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPP 29
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/26 (38%), Positives = 10/26 (38%)
Frame = +1
Query: 718 PXXXPXXXXPPXXXXXPXXPPPXXPP 795
P P PP P PPP PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 741 PPPPXXXXXXXPPPXXPPXP 800
PPPP PPP PP P
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/44 (29%), Positives = 13/44 (29%)
Frame = +1
Query: 745 PPXXXXXPXXPPPXXPPXPPPXXXXXXPXXXXXPXXXXXXPPPP 876
PP P P P PP P P PPPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 729 PXXXPPPPXXXXXXXPPPXXPP 794
P PPPP PPP PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/44 (29%), Positives = 13/44 (29%)
Frame = +1
Query: 745 PPXXXXXPXXPPPXXPPXPPPXXXXXXPXXXXXPXXXXXXPPPP 876
PP P P P PPP P P PPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/43 (30%), Positives = 13/43 (30%)
Frame = +1
Query: 748 PXXXXXPXXPPPXXPPXPPPXXXXXXPXXXXXPXXXXXXPPPP 876
P P PP PP PP P P PP P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/52 (28%), Positives = 15/52 (28%)
Frame = +1
Query: 718 PXXXPXXXXPPXXXXXPXXPPPXXPPXPPPXXXXXXPXXXXXPXXXXXXPPP 873
P P P P PP P PPP P P PPP
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPR-PSIPPPSPASAPPIPSKAPPIPSSLPPP 174
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 806 GGGXGGXXGGGXXGXXXXXGG 744
GGG GG GGG G GG
Sbjct: 29 GGGRGGARGGGRGGARGGRGG 49
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/53 (28%), Positives = 15/53 (28%)
Frame = -2
Query: 875 GGGGXXXXXXGXXXXXGXXXXXXGGGXGGXXGGGXXGXXXXXGGXXXXGXXXG 717
G GG G G GG GG GG G G G G
Sbjct: 10 GRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSG 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,593,188
Number of Sequences: 5004
Number of extensions: 17384
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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