Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_E18
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    28   2.0  
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa...    26   6.2  
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    26   8.2  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    26   8.2  

>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +2

Query: 521 GFVLPAPYEAYPQYFVNMEVKNKMDYVKMMDGCLDEKI 634
           GF+ PA    + +Y   M V  +  +  ++  CLD ++
Sbjct: 308 GFLTPADKSLHSRYIAEMNVGKRWQWSDLLKSCLDLRV 345


>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
           Swd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/57 (24%), Positives = 23/57 (40%)
 Frame = +2

Query: 617 CLDEKICYNYGIIKENXXFVMYANYSNSLTYPNXEDRXAYLTEDVGLNAYYHYFHSH 787
           C+  K   +    K       + ++SNSL + + ++       DV  N Y  YF  H
Sbjct: 55  CISGKFVKSLASKKYGAHLGRFTHHSNSLIHASTKEDNTVRYLDVVTNRYLRYFPGH 111


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 768 ITISTXTYRXGGTLGKYGPFXXXRGGN 848
           + +S  TYR  GT G+  P     GGN
Sbjct: 436 VYLSNTTYRREGTSGQLSPTSSIMGGN 462


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -1

Query: 330 GKESDLVHHHEIFVGFHVCVAVLAGLDVEVLGDFVVLSFIADLVNVVE-KRQNLLLLFDE 154
           G  S  +HHH++ +  H  +  L G   EV G    L++ +D + +      N++ ++D 
Sbjct: 279 GSRSGAIHHHDVRIANHQ-IGTLQGHSSEVCG----LAWRSDGLQLASGGNDNVVQIWDA 333

Query: 153 RS 148
           RS
Sbjct: 334 RS 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,138,460
Number of Sequences: 5004
Number of extensions: 61420
Number of successful extensions: 180
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)