Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_E10
         (937 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    31   0.18 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.8  
SPAC589.11 |mug82||translation release factor |Schizosaccharomyc...    26   8.8  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 22/62 (35%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
 Frame = +1

Query: 499 PPPDXXXHPQLHIPLRTPPVXSHXVPXXRVXPAQ-XXPAXSPTILRPPPXCXLPXPPATX 675
           PPP     P   IP + PP+ S   P     PAQ   P  SP      P    P PP   
Sbjct: 150 PPPSPASAPP--IPSKAPPIPSSLPP-----PAQPAAPVKSPPSAPSLPSAVPPMPPKVP 202

Query: 676 PP 681
           PP
Sbjct: 203 PP 204


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 19/61 (31%), Positives = 23/61 (37%)
 Frame = +1

Query: 499  PPPDXXXHPQLHIPLRTPPVXSHXVPXXRVXPAQXXPAXSPTILRPPPXCXLPXPPATXP 678
            PP D   HP    PL  P   S   P  RV P     + +P +  P         P+T P
Sbjct: 986  PPKD---HPP-SAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAP 1041

Query: 679  P 681
            P
Sbjct: 1042 P 1042



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
 Frame = +1

Query: 523  PQLHIPLRTPPVXSHXVPXXRVX-PAQXXPAXSPTILRPPPXCXLPXPPATXP 678
            P +  P   PPV    V    V  P+   P   P++  PP       PP   P
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKP 1164


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = +1

Query: 562  SHXVPXXRVXPAQXXPAXSPTILRPPPXCXLPXPPATXP 678
            +H V    V P    P        PPP   +P PP+  P
Sbjct: 1684 AHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPP 1722


>SPAC589.11 |mug82||translation release factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 182

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 168 LFMNTEPCFDTKMXRNKQPHYNECACTMRD*DSMLKYL 55
           +F N   CF  K  R    + N+C  T  + + +LK++
Sbjct: 1   MFANFRNCFKIKNSRLIYDNINKCLLTKEETNQLLKFI 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,581,382
Number of Sequences: 5004
Number of extensions: 18777
Number of successful extensions: 43
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)