Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_E10
         (937 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    35   0.096
U88170-4|AAB42245.2|  425|Caenorhabditis elegans Hypothetical pr...    33   0.39 
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/...    31   0.90 
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/...    31   0.90 
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    31   1.2  
AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily a...    31   1.6  
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    31   1.6  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z78411-2|CAB01646.1|  285|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    29   4.8  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    29   6.3  

>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 34.7 bits (76), Expect = 0.096
 Identities = 20/60 (33%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
 Frame = +1

Query: 499 PPPDXXXHPQLHIPLRTPP---VXSHXVPXXRVXPAQXXPAXSPTILRPPPXCXLPXPPA 669
           P P    +PQ  +P   PP      H VP       Q  P   P    PPP    P PPA
Sbjct: 95  PAPPPAPYPQHAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPPPHYPPPPPA 154



 Score = 32.3 bits (70), Expect = 0.51
 Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
 Frame = +1

Query: 499 PPPDXXXHPQLHIPLRTPP---VXSHXVPXXRVXPA----QXXPAXSPTILRPPPXCX-- 651
           P P    +PQ  +P+  PP      H VP     PA       PA +P   +PPP     
Sbjct: 80  PAPPLASYPQNAVPVPAPPPAPYPQHAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPPPP 139

Query: 652 -LPXPPATXPP 681
             P PP   PP
Sbjct: 140 HYPPPPPHYPP 150



 Score = 30.7 bits (66), Expect = 1.6
 Identities = 22/76 (28%), Positives = 27/76 (35%)
 Frame = +1

Query: 457 PTXTXXHPXXXSYXPPPDXXXHPQLHIPLRTPPVXSHXVPXXRVXPAQXXPAXSPTILRP 636
           P     +P      P P    +PQ  +P   PP+ S+  P   V      PA  P    P
Sbjct: 51  PPPPAPYPQQAVPAPAPPPAPYPQHAVPAPAPPLASY--PQNAVPVPAPPPAPYPQHAVP 108

Query: 637 PPXCXLPXPPATXPPH 684
            P      PPA  P H
Sbjct: 109 AP----APPPAPYPQH 120



 Score = 29.9 bits (64), Expect = 2.7
 Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
 Frame = +1

Query: 499 PPPDXXXHPQLHIPLRTP---PVXSHXVPXXRVXPAQXXPAXSPTILRPPPXCXLPXP-- 663
           PPP    +PQ  +P   P   P   H VP     P    P  +  +  PPP    P P  
Sbjct: 50  PPPPPAPYPQQAVPAPAPPPAPYPQHAVPAP-APPLASYPQNAVPVPAPPP---APYPQH 105

Query: 664 --PATXPP 681
             PA  PP
Sbjct: 106 AVPAPAPP 113


>U88170-4|AAB42245.2|  425|Caenorhabditis elegans Hypothetical
           protein C10G11.6 protein.
          Length = 425

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 607 PAXSPTILRPPPXCXLPXPPATXPP 681
           P  SP + RPPP   +P PP   PP
Sbjct: 171 PIVSPDVRRPPPSLSIPLPPMHIPP 195


>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           c protein.
          Length = 1510

 Score = 31.5 bits (68), Expect = 0.90
 Identities = 21/79 (26%), Positives = 25/79 (31%), Gaps = 2/79 (2%)
 Frame = +1

Query: 451 LLPTXTXXHPXXXSYX--PPPDXXXHPQLHIPLRTPPVXSHXVPXXRVXPAQXXPAXSPT 624
           L  T T   P   S+   PPP    HP +H+      V    +P           A  P 
Sbjct: 537 LSSTHTNSVPNLKSHETPPPPPPKGHPSVHLQTPYQHVQPQMIPATYYNLPPQHMAPPPI 596

Query: 625 ILRPPPXCXLPXPPATXPP 681
               PP C    PP    P
Sbjct: 597 TTSLPPFCDFSQPPPGFTP 615


>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           a protein.
          Length = 1507

 Score = 31.5 bits (68), Expect = 0.90
 Identities = 21/79 (26%), Positives = 25/79 (31%), Gaps = 2/79 (2%)
 Frame = +1

Query: 451 LLPTXTXXHPXXXSYX--PPPDXXXHPQLHIPLRTPPVXSHXVPXXRVXPAQXXPAXSPT 624
           L  T T   P   S+   PPP    HP +H+      V    +P           A  P 
Sbjct: 537 LSSTHTNSVPNLKSHETPPPPPPKGHPSVHLQTPYQHVQPQMIPATYYNLPPQHMAPPPI 596

Query: 625 ILRPPPXCXLPXPPATXPP 681
               PP C    PP    P
Sbjct: 597 TTSLPPFCDFSQPPPGFTP 615


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 20/76 (26%), Positives = 25/76 (32%)
 Frame = +1

Query: 439 LXFXLLPTXTXXHPXXXSYXPPPDXXXHPQLHIPLRTPPVXSHXVPXXRVXPAQXXPAXS 618
           + F ++P  +       S  PPP     P +  P   P       P     P    P   
Sbjct: 7   ILFSIIPIASSTFGGCCSMGPPPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPP 66

Query: 619 PTILRPPPXCXLPXPP 666
           P    PPP C  P PP
Sbjct: 67  PP--PPPPMCPPPPPP 80


>AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform b protein.
          Length = 774

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
 Frame = +1

Query: 526 QLHIPLRTPPVXSHXVPXXR--VXPAQXXPAXSPTILRPP-PXCXLPXPPATXP 678
           Q+  P  +PP+    +P       P    P   PTI  PP P    P PPA+ P
Sbjct: 65  QVGRPTESPPLPPPPLPLSNPPAKPTPPPPPPKPTIRPPPIPASPPPRPPASEP 118


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
 Frame = +1

Query: 526 QLHIPLRTPPVXSHXVPXXR--VXPAQXXPAXSPTILRPP-PXCXLPXPPATXP 678
           Q+  P  +PP+    +P       P    P   PTI  PP P    P PPA+ P
Sbjct: 287 QVGRPTESPPLPPPPLPLSNPPAKPTPPPPPPKPTIRPPPIPASPPPRPPASEP 340


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 24/83 (28%), Positives = 30/83 (36%), Gaps = 7/83 (8%)
 Frame = +1

Query: 478 PXXXSYXPP--PDXXXHPQLHIPLRTPPVXSHXVPXXRVXPAQXXPAXSPTILRPPPXCX 651
           P   S  PP  P     P   IP  +P      V      P    P  +P+ + PPP   
Sbjct: 459 PSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPP 518

Query: 652 LPXPPA-----TXPPHXXLXXLP 705
            P PPA     + PP   L  +P
Sbjct: 519 PPPPPALEQEISGPPTVRLTAVP 541


>Z78411-2|CAB01646.1|  285|Caenorhabditis elegans Hypothetical
           protein F02D8.2 protein.
          Length = 285

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 22/81 (27%), Positives = 27/81 (33%), Gaps = 5/81 (6%)
 Frame = +1

Query: 478 PXXXSYXPPPDXXXHPQLHIPLRTP---PVXSHXVPXXRVXP--AQXXPAXSPTILRPPP 642
           P   SY   P     P    P       P+ S+ +P   V P  A       P  +RPPP
Sbjct: 68  PPANSYATAPANYAAPSNAYPFAPQYSIPMNSYAMPKYAVAPQYAMVPYPTPPAYVRPPP 127

Query: 643 XCXLPXPPATXPPHXXLXXLP 705
               P P    PP      +P
Sbjct: 128 VYVTPPPVYITPPPTTTTTIP 148


>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 16/52 (30%), Positives = 20/52 (38%)
 Frame = +1

Query: 523 PQLHIPLRTPPVXSHXVPXXRVXPAQXXPAXSPTILRPPPXCXLPXPPATXP 678
           P    P    PV +   P     PA+  P   P+  +P P    P PP T P
Sbjct: 203 PARPAPYIERPVPARPAPYIEPTPARPAPYIEPSTAKPQPR---PQPPRTRP 251


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 19/69 (27%), Positives = 22/69 (31%)
 Frame = +1

Query: 499 PPPDXXXHPQLHIPLRTPPVXSHXVPXXRVXPAQXXPAXSPTILRPPPXCXLPXPPATXP 678
           PPP          P   PP      P  R  P +  P   P+  R PP    P P    P
Sbjct: 125 PPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTP-PSPEPRNP 183

Query: 679 PHXXLXXLP 705
           P      +P
Sbjct: 184 PRTPPSPIP 192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,343,217
Number of Sequences: 27780
Number of extensions: 129051
Number of successful extensions: 530
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)