Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_E02
         (935 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.43 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.56 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   0.75 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   1.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.43
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +1

Query: 661 PXXXAPXPPPPXPXXPPPPPXPXPXPXPXPPPPP 762
           P   AP P P  P   P  P     P P   PPP
Sbjct: 16  PSSGAPGPQPS-PHQSPQAPQRGSPPNPSQGPPP 48



 Score = 22.6 bits (46), Expect = 5.3
 Identities = 9/27 (33%), Positives = 10/27 (37%)
 Frame = +1

Query: 646 PXXXXPXXXAPXPPPPXPXXPPPPPXP 726
           P    P   +  PPP  P   PP   P
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 5.3
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +1

Query: 688 PPXPXXPPPPPXPXPXPXPXPP 753
           PP P   PPP  P   P    P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.8 bits (54), Expect = 0.56
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 736 PXPXPPPPPP 765
           P P PPPPPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 25.4 bits (53), Expect = 0.75
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 688 PPXPXXPPPPP 720
           PP P  PPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 24.6 bits (51), Expect = 1.3
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 881 PPXPXPPXPXPXPPXPPS 934
           PP P PP P P    P S
Sbjct: 338 PPKPAPPPPPPSSSGPDS 355



 Score = 23.0 bits (47), Expect = 4.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 875 PPPPXPXPPXPXPXPP 922
           PP P P PP P    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 5.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 730 PXPXPXPPPP 759
           P P P PPPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 661 PXXXAPXPPPPXPXXP 708
           P   AP PPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 681 PAXPXPXPPPP 713
           P  P P PPPP
Sbjct: 338 PPKPAPPPPPP 348


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 25.4 bits (53), Expect = 0.75
 Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
 Frame = -1

Query: 764 GGGGGGXGXGXGXGXGGG----GGXXGXGGGGXG 675
           GG G     G   G  GG    G   G GGGG G
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGGGLG 53



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 764 GGGGGGXGXGXG 729
           GGGGGG G   G
Sbjct: 46  GGGGGGLGIASG 57


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -3

Query: 264 IHNVNTCDSFSYNTDLGQFRSNSTSNF 184
           IHN N  ++ +YN +   + +N+ +N+
Sbjct: 323 IHNNNNYNNNNYNNNYNNYNNNNYNNY 349


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 742  PXPPPPPP 765
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 742  PXPPPPPP 765
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 661  PXXXAPXPPPPXP 699
            P   +P PPPP P
Sbjct: 1852 PVSGSPEPPPPPP 1864



 Score = 21.8 bits (44), Expect = 9.2
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 681  PAXPXPXPPPPP 716
            P    P PPPPP
Sbjct: 1852 PVSGSPEPPPPP 1863


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,464
Number of Sequences: 438
Number of extensions: 7438
Number of successful extensions: 51
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)