Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_D21
(891 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.67
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.89
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 1.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.6
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 1.6
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 28 1.6
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.6
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 6.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 8.3
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.5 bits (63), Expect = 0.67
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = +1
Query: 751 PXPXXKTXXQXPPXXPXTPKXPPFXPLXPXPPPPXXXXXXPXPP 882
P P P P P P P PPPP P PP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +1
Query: 739 PXXXPXPXXKTXXQXPPXXPXTPKXPPFXPLXPXPPPP 852
P P P PP P P P P PPPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = +2
Query: 764 KKXXXKXPPKXPXPXKXPXSXPFXPXPPPPXXPXKXXPP 880
+K K PP P P P P P PP P PP
Sbjct: 725 QKLLLKSPPPPPPAVIVPTPAP-APIPVPPPAPIMGGPP 762
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 0.89
Identities = 15/49 (30%), Positives = 16/49 (32%)
Frame = +1
Query: 736 PPXXXPXPXXKTXXQXPPXXPXTPKXPPFXPLXPXPPPPXXXXXXPXPP 882
PP P P P P PP P+ P P P P PP
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAP-PLPAGMPAAPPLPP 471
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +1
Query: 784 PPXXPXTPKXPPFXPLXPXPPP 849
PP P PP P P PPP
Sbjct: 457 PPLPAGMPAAPPLPPAAPAPPP 478
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/39 (33%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Frame = +1
Query: 736 PPXXXPXPXXKTXXQXPPXXP-XTPKXPPFXPLXPXPPP 849
PP P PP P P PP P P PP
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 786 PXXPPNPXXPPXXPPFXXXPPPP 854
P PP P PP P PPPP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPP 28
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Frame = +2
Query: 785 PPKXPX-PXKXPXSXPFXPXPPPPXXPXKXXPP 880
PP P P K P S P P PP P PP
Sbjct: 173 PPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/45 (33%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Frame = +1
Query: 715 PXXXXXFPPXXXPXPXXKTXXQXPPXXPXTPK-XPPFXPLXPXPP 846
P PP P K+ PP P P PP P P PP
Sbjct: 165 PPIPSSLPPPAQPAAPVKS----PPSAPSLPSAVPPMPPKVPPPP 205
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +3
Query: 747 PAXTPXKNXXPXXPXXPPNPXXPPXXPPFXXXPPPP 854
P P P P PP P PP PP PP P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPP----PPLP 1736
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Frame = +3
Query: 735 SPXXPAXTPX---KNXXPXXPXXPPNPXXPPXXPPFXXXPPPPXXXXKXXPP 881
+P P TP ++ P P P P PP PP P PP
Sbjct: 1682 APAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = -3
Query: 853 GGGGXWXKGGXXG--GFXGXGGFXGXFG 776
GGG +GG G GF G GGF G G
Sbjct: 446 GGGSRGGRGGFGGRGGFGGRGGFGGGRG 473
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Frame = -3
Query: 853 GGGGXWXKGGXXGGFXG--XGGFXGXF 779
GG G +GG GGF G GGF G F
Sbjct: 168 GGFGGGSRGGSRGGFRGGSRGGFRGRF 194
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = -3
Query: 853 GGGGXWXKGGXXGGFXGXGGFXGXFGXXFFXGVMAGXXG 737
GGG +GG G G GGF G G F G G G
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGG--FGGGPGGFGG 263
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -3
Query: 850 GGGXWXKGGXXGGFXGX-GGFXGXFG 776
GGG GG GGF G GGF G G
Sbjct: 241 GGGPGGFGGGLGGFGGGPGGFGGGPG 266
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -3
Query: 877 GXXFXXXXGGGGXWXKGGXXGGFXGXGGFXG 785
G F GG G G GGF G GGF G
Sbjct: 187 GGGFGGFGGGSGGPPPG--PGGFGGFGGFGG 215
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/44 (29%), Positives = 13/44 (29%)
Frame = +3
Query: 747 PAXTPXKNXXPXXPXXPPNPXXPPXXPPFXXXPPPPXXXXKXXP 878
P T N P P P P P PPPP P
Sbjct: 712 PMGTGAVNSPAIKPQVTPAPPTPAPTPAVKHHPPPPPVRSSISP 755
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/49 (28%), Positives = 15/49 (30%)
Frame = +1
Query: 736 PPXXXPXPXXKTXXQXPPXXPXTPKXPPFXPLXPXPPPPXXXXXXPXPP 882
PP P K PP P + P P PP P P P
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,164,151
Number of Sequences: 5004
Number of extensions: 12723
Number of successful extensions: 207
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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