Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_D18
         (951 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.24 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.31 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.9  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   9.0  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 576 SPPXPLPXPPPXTPXXRPPTXPPP 647
           S P   P PPP  P   PP+ PPP
Sbjct: 3   SLPPGNPPPPPPPPGFEPPSQPPP 26



 Score = 30.3 bits (65), Expect = 0.42
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 582 PXPLPXPPPXTPXXRPPTXPPP 647
           P P P PP   P  +PP  PPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 582 PXPLPXPPPXTPXXRPPTXPPP 647
           P P+P PPP      PP  PPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPP 767



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 588 PLPXPPPXTPXXRPPTXPPP 647
           P P PPP      PP  PPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 582 PXPLPXPPPXTPXXRPPTXPPP 647
           P P P PP       PP  PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +3

Query: 579  PPXPLPXPPPXTPXXR-PPTXPPP 647
            PP  +P PP   P    PP+ PPP
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +3

Query: 576 SPPXPLPXP-PPXTPXXRPPTXPP 644
           +PP P P   PP  P   PP+ PP
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAPP 437


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 582 PXPLPXPPPXTPXXRPPTXPPP 647
           P   P PP      RPPT  PP
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPP 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,128,929
Number of Sequences: 5004
Number of extensions: 28473
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)