Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_D17
         (968 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   1.3  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.0  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.0  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 15/46 (32%), Positives = 15/46 (32%)
 Frame = +1

Query: 793 PPPXLXPSSXXPPXXPXPCPXIXXPXPXSXPXXXHPXLPPXGXXPP 930
           P P    S   PP    P P I  P P S P       P     PP
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPP 173



 Score = 25.8 bits (54), Expect = 9.2
 Identities = 14/42 (33%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
 Frame = +1

Query: 793 PPPXLXPSSXXPPXXPX---PCPXIXXPXPXSXPXXXHPXLP 909
           PP    P    PP  P    P P    P P S P    P  P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAP 180


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -2

Query: 883 GVXXGXVXGXGGRGGGXXGGXXKXGR 806
           G   G   G GGRGGG  GG    GR
Sbjct: 117 GPLHGPHGGFGGRGGGRMGGRGGRGR 142


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 16/45 (35%), Positives = 17/45 (37%)
 Frame = +1

Query: 796 PPXLXPSSXXPPXXPXPCPXIXXPXPXSXPXXXHPXLPPXGXXPP 930
           PP L   +   P  P   P I  P P   P    P LPP    PP
Sbjct: 436 PPSLPMGAPAAPPLPPSAP-IAPPLPAGMPAA--PPLPPAAPAPP 477



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
 Frame = +2

Query: 764 SPPXPXLXPFXXPXSXXLPXXPPSXP-XPAP 853
           +PP P   P   P    +P  PP  P  PAP
Sbjct: 446 APPLPPSAPIAPPLPAGMPAAPPLPPAAPAP 476


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 12/38 (31%), Positives = 14/38 (36%)
 Frame = +1

Query: 796  PPXLXPSSXXPPXXPXPCPXIXXPXPXSXPXXXHPXLP 909
            PP +   +  PP    P P    P P   P    P LP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 764  SPPXPXLXPFXXPXSXXLPXXPPSXPXP 847
            +PP P +     P +  +P  PPS P P
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +3

Query: 555 ASQKSTLKSXVAXTPTGL*RYXXFPPWXXSPRAPSLFPTLXAYPDTLSXLSPPS 716
           +S K + KS V+  PTG       PP     + PS  PT+ A P T   + PP+
Sbjct: 407 SSSKVSAKS-VSRKPTGAPAIPKLPP-----KHPSRQPTVRATPSTGKQIEPPN 454


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
 Frame = +1

Query: 796  PPXLXPSSXXPPXXPXPC---PXIXXP---XPXSXPXXXHPXLPPXGXXPP 930
            PP   PSS  PP  P P    P +  P    P   P    P +PP    PP
Sbjct: 1169 PPVPAPSSGIPP-VPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
 Frame = +1

Query: 793 PPPXLXPSSXXPPXX-PXPCPXIXXPXPXSXPXXXHPXLPPXGXXPP 930
           PP  + P+    P   P P P +  P P   P       PP    PP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = +1

Query: 838 PXPCPXIXXPXPXSXPXXXHPXLPPXGXXPP 930
           P P P +  P P   P    P  P  G  PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPP 763


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,649,181
Number of Sequences: 5004
Number of extensions: 46169
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)