Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_D16
         (1097 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.6  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   6.3  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 569 PPXXXPPPPHPXAXG 613
           PP   PPPP P + G
Sbjct: 338 PPKPAPPPPPPSSSG 352



 Score = 22.6 bits (46), Expect = 6.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 1059 PPPXXPPPPP 1088
            PP   PPPPP
Sbjct: 338  PPKPAPPPPP 347



 Score = 22.6 bits (46), Expect = 6.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 1059 PPPXXPPPPP 1088
            P P  PPPPP
Sbjct: 339  PKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 8.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 1062 PPXXPPPPPXP 1094
            PP   PPPP P
Sbjct: 338  PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 8.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 1065 PXXPPPPPXPP 1097
            P  P PPP PP
Sbjct: 338  PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 8.4
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 241 EPXPPPPXPXXXPPPXXK 294
           +P PPPP P    P   K
Sbjct: 340 KPAPPPPPPSSSGPDSAK 357


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 13/38 (34%), Positives = 14/38 (36%)
 Frame = +3

Query: 351 GPPPLXXXPPXTTPXAXTNXXGHPPXXXPPPSXPPPXP 464
           GP P     P  +P A        P   PPP  PP  P
Sbjct: 22  GPQP----SPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 23.0 bits (47), Expect = 4.8
 Identities = 11/38 (28%), Positives = 12/38 (31%)
 Frame = +1

Query: 493 PXAXXPPPXPPXRAXXTGPXXXXXPPPXLXPPXPPPRG 606
           P +  P P P        P     P P   PP   P G
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPG 53



 Score = 23.0 bits (47), Expect = 4.8
 Identities = 14/42 (33%), Positives = 15/42 (35%)
 Frame = +1

Query: 475 SPPPXPPXAXXPPPXPPXRAXXTGPXXXXXPPPXLXPPXPPP 600
           S  P P  +    P  P R     P     PPP   PP  PP
Sbjct: 18  SGAPGPQPSPHQSPQAPQRGSPPNPSQG--PPPG-GPPGAPP 56



 Score = 22.2 bits (45), Expect = 8.4
 Identities = 9/23 (39%), Positives = 9/23 (39%)
 Frame = +1

Query: 427 PXXPPPPXPPXXPXXLSPPPXPP 495
           P    PP P   P    PP  PP
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPP 56


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 1074 PPPPPXPP 1097
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 13/32 (40%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
 Frame = -1

Query: 521 GXGGGXXAXG---GXGGGERXXGXXGGXGGGG 435
           G  G   A G   G  GG    G   G GGGG
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGGG 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.152    0.568 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,983
Number of Sequences: 438
Number of extensions: 11582
Number of successful extensions: 24
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 36873306
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)