Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_D12
         (1019 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.20 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   0.38 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   0.80 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.2  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   5.6  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    26   9.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.5 bits (68), Expect = 0.20
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
 Frame = +3

Query: 402 PXXPPPPP---PPXXPQXPPXPXY 464
           P  PPPPP   PP  P  PP P Y
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGY 32



 Score = 30.3 bits (65), Expect = 0.46
 Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
 Frame = +3

Query: 393 SXXPXXPPPPPPP---XXPQXPPXP 458
           S  P  PPPPPPP     P  PP P
Sbjct: 3   SLPPGNPPPPPPPPGFEPPSQPPPP 27



 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
 Frame = -3

Query: 210 PXXPPPPPXXXPP--PPP 163
           P  PPPPP   PP  PPP
Sbjct: 9   PPPPPPPPGFEPPSQPPP 26



 Score = 26.6 bits (56), Expect = 5.6
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 206 PPPPPPRXXXPPXPP 162
           PPPPPP    PP  P
Sbjct: 10  PPPPPPPGFEPPSQP 24



 Score = 26.6 bits (56), Expect = 5.6
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 206 PPPPPPRXXXPPXPP 162
           PPPPPP    P  PP
Sbjct: 11  PPPPPPGFEPPSQPP 25


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect(2) = 0.38
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 402 PXXPPPPPPP 431
           P  PPPPPPP
Sbjct: 942 PAFPPPPPPP 951



 Score = 23.0 bits (47), Expect(2) = 0.38
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 414 PPPPPPXXP 440
           PPPPPP  P
Sbjct: 945 PPPPPPPPP 953


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.5 bits (63), Expect = 0.80
 Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
 Frame = +3

Query: 402 PXXPPPPP---PPXXPQXPPXPXYXTXPXXXXXPXSXPP 509
           P  PPP P   PP   + PP P     P     P   PP
Sbjct: 147 PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185



 Score = 26.2 bits (55), Expect = 7.4
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 402 PXXPPPPPPPXXPQXPPXPXYXT 470
           P  PPPPP P      P P   T
Sbjct: 3   PAPPPPPPAPAPAAAAPAPPLMT 25


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/49 (28%), Positives = 17/49 (34%)
 Frame = +3

Query: 780  PSPXXTXPXPPPPNQXXXXXXFXXXXPXTHXPXTXPPPIPXPXPXAXSL 926
            P P    P  PPP+            P    P    PP+P P   A S+
Sbjct: 1201 PKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSV 1249



 Score = 26.2 bits (55), Expect = 7.4
 Identities = 13/42 (30%), Positives = 16/42 (38%)
 Frame = +3

Query: 780  PSPXXTXPXPPPPNQXXXXXXFXXXXPXTHXPXTXPPPIPXP 905
            P P    P  PPP++           P    P T  PP+P P
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPST-APPVPTP 1222


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 201  PPPPPXXXPPPP 166
            PPPPP   PPPP
Sbjct: 1707 PPPPPMSVPPPP 1718



 Score = 26.6 bits (56), Expect = 5.6
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +3

Query: 411  PPPPPPPXXPQXPPXPXYXTXPXXXXXPXSXPP 509
            P PPPPP     PP P   + P     P S PP
Sbjct: 1705 PTPPPPPM--SVPPPP---SAPPMPAGPPSAPP 1732



 Score = 25.8 bits (54), Expect = 9.8
 Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
 Frame = +3

Query: 402  PXXPPPP---PPPXXPQXPPXPXYXTXPXXXXXPXSXPP 509
            P  PPPP   PPP  P  PP P           P S  P
Sbjct: 1705 PTPPPPPMSVPPP--PSAPPMPAGPPSAPPPPLPASSAP 1741


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 13/42 (30%), Positives = 13/42 (30%)
 Frame = +3

Query: 411 PPPPPPPXXPQXPPXPXYXTXPXXXXXPXSXPPRHTXXXXXP 536
           PPPPPPP        P           P   PPR       P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIP 352



 Score = 26.2 bits (55), Expect = 7.4
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = +3

Query: 411 PPPPPPPXXPQXPPXPXYXTXPXXXXXPXSXPP 509
           PPPPPP   P     P   +       P + PP
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
 Frame = -3

Query: 210 PXXPPPPP---XXXPPPPP 163
           P  PPPPP      PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPP 779



 Score = 26.6 bits (56), Expect = 5.6
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 219 AXXPXXPPPPPXXXPPPPP 163
           A  P  PP P    PPPPP
Sbjct: 747 APIPVPPPAPIMGGPPPPP 765



 Score = 26.2 bits (55), Expect = 7.4
 Identities = 11/20 (55%), Positives = 11/20 (55%), Gaps = 4/20 (20%)
 Frame = +3

Query: 411 PPPPPPP----XXPQXPPXP 458
           PPPPPPP      P  PP P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 402 PXXPPPPPPPXXPQ 443
           P  PPPPPP   PQ
Sbjct: 236 PAPPPPPPPTLPPQ 249



 Score = 25.8 bits (54), Expect = 9.8
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 784 PPXXPSHXPHPPTN 825
           PP  PS  P PPTN
Sbjct: 275 PPATPSQPPRPPTN 288


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 206 PPPPPPRXXXPP 171
           PPPPPP+   PP
Sbjct: 206 PPPPPPQQNYPP 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,524,480
Number of Sequences: 5004
Number of extensions: 17705
Number of successful extensions: 379
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 531251476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)