Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_D12
         (1019 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.4  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +3

Query: 393 SXXPXXPPPPPPPXXPQXP 449
           S  P  P PPPPP     P
Sbjct: 335 SDTPPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 5.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 192 PPXXXPPPPP 163
           PP   PPPPP
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.6 bits (46), Expect = 5.8
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -3

Query: 210 PXXPPPPPXXXPPPPPXLXK 151
           P  PPPPP    P    L K
Sbjct: 341 PAPPPPPPSSSGPDSAKLDK 360



 Score = 22.2 bits (45), Expect = 7.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 198 PPPPXXXPPPP 166
           PP P   PPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 195 PPPXXXPPPPP 163
           PP    PPPPP
Sbjct: 338 PPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 411  PPPPPPPXXPQ 443
            PPPPPPP   Q
Sbjct: 1356 PPPPPPPSSGQ 1366



 Score = 23.8 bits (49), Expect = 2.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 411  PPPPPPP 431
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 4.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 206  PPPPPPR 186
            PPPPPPR
Sbjct: 1859 PPPPPPR 1865


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,884
Number of Sequences: 438
Number of extensions: 4778
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33983859
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)