Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_D08
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.14c |cox17||metallochaperone Cox17|Schizosaccharomyces ...    43   7e-05
SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        27   3.5  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   3.5  

>SPBC26H8.14c |cox17||metallochaperone Cox17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 70

 Score = 42.7 bits (96), Expect = 7e-05
 Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
 Frame = +3

Query: 243 TKRARDACIIE--NGEENCGPLIEEHKACMRKMGFNI 347
           TK+ARDAC+++  NG   C  LIE HK CM + G+ +
Sbjct: 34  TKQARDACMLQSSNGPIECAKLIEAHKKCMAQYGYEV 70


>SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 100

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 144 FPIFQRFFHIYDAIQFNIFQFAA 76
           FP+F  +FHI D + F +F F A
Sbjct: 23  FPLFHSYFHIPDFLSF-VFPFVA 44


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 498 IKYTVLFVTFITILMGSTLINQVVNI*KC*WYWQDVKFD 614
           +K T+L + F+++L+ STL    + I K   Y Q+ K D
Sbjct: 258 LKSTILLMVFLSVLVSSTLFVTPLAIKKLLQYLQNPKSD 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,112,227
Number of Sequences: 5004
Number of extensions: 60658
Number of successful extensions: 143
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)