Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_D07
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    34   0.023
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.38 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.88 
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    27   4.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.2  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   8.2  

>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 34.3 bits (75), Expect = 0.023
 Identities = 19/45 (42%), Positives = 20/45 (44%)
 Frame = +3

Query: 147 MDEEYDVIVLGTGLKNVFKPACCPXLGKXFXHXTPKNTXGGXXGS 281
           MDEEYDVIVLGTGL            GK   H    +  G    S
Sbjct: 1   MDEEYDVIVLGTGLTECVLSGLLSVDGKKVLHIDRNDYYGADSAS 45


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
 Frame = +2

Query: 587 LKKXXXPPPXFFLP-PXXXPXKKTPP-PXGGXXXPPPP 694
           LK    PPP   +P P   P    PP P  G   PPPP
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
 Frame = +2

Query: 587 LKKXXXPPPXFFLPPXXXPXK-KTPPP---XGGXXXPPPP 694
           L K   PPP   + P   P     PPP    GG   PPPP
Sbjct: 728 LLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767



 Score = 26.2 bits (55), Expect = 6.2
 Identities = 16/55 (29%), Positives = 18/55 (32%)
 Frame = +2

Query: 545 KKXPXPPXSXLGXFLKKXXXPPPXFFLPPXXXPXKKTPPPXGGXXXPPPPXXXXP 709
           K  P PP + +         P P    P    P    PPP      PPPP    P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPP-APIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 25/75 (33%), Positives = 25/75 (33%), Gaps = 4/75 (5%)
 Frame = -3

Query: 803 FPXXGGGGXGXXGXXGGGGXFXXXPPFFXXXXGXXFXG---GGXKXXPPXGGGFFXG-GX 636
           F   G  G G  G  GG G     P  F    G    G   GG        GGF  G G 
Sbjct: 180 FHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG 239

Query: 635 XGXGEKXXGGGXXFF 591
            G G    GGG   F
Sbjct: 240 FGGGPGGFGGGLGGF 254



 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/40 (40%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
 Frame = -2

Query: 708 GXXFXG-GGGKXXPPXGGGVFLXGXXXGGRKKXGGGXXFF 592
           G  F G GGG   PP G G F      GG     GG   F
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGF 226


>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 159 YDVIVLGTGLKNVFKPACCPXLGKXFXHXTPKNTXGGXXGS 281
           YDVI++GT L+N    A      +   H    +  G   GS
Sbjct: 7   YDVIIVGTNLRNSILSAALSWANQRVLHIDENSFYGEIDGS 47


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +2

Query: 605  PPPXFFLPPXXXPXKKTPPPXGGXXXPPPP 694
            PPP    PP   P    P P G    PPPP
Sbjct: 1709 PPPMSVPPPPSAP----PMPAGPPSAPPPP 1734


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +2

Query: 605 PPPXFFLPPXXXPXKKTPPPXGGXXXPPPP 694
           PPP F  P    P    P        PPPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPP 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,194,329
Number of Sequences: 5004
Number of extensions: 33440
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)