Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_D06
(1003 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 33 0.063
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 33 0.063
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.15
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.19
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 31 0.25
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.45
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.45
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 1.0
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 27 3.1
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 3.1
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.1 bits (72), Expect = 0.063
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Frame = +2
Query: 806 SPPTXSXPXRPPXPAPXXP----PPXPSHPXRPXPXPLP 910
+PP S P PP P P PP P+ P P PLP
Sbjct: 1698 APPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 31.1 bits (67), Expect = 0.25
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = +2
Query: 794 AXXPSPPTXSXPXRPPXPAPXXPPPXPSHPXRPXP 898
A P PP S P PP AP P PS P P P
Sbjct: 1704 APTPPPPPMSVP--PPPSAPPMPAGPPSAPPPPLP 1736
Score = 29.1 bits (62), Expect = 1.0
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +2
Query: 809 PPTXSXPXRPPXPAPXXPPPXPSHPXRPXPXP 904
PP S P P P PPP P+ P P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 28.3 bits (60), Expect = 1.8
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +2
Query: 788 PXAXXPSPPTXSXPXRPPXPAPXXPPPXP-SHPXRPXPXPLP 910
P +PP PP + PPP P S P P P+P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMP 1724
Score = 26.6 bits (56), Expect = 5.5
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +2
Query: 788 PXAXXPSPPTXSXPXRPPXPAPXXPPPXPSHPXRPXP 898
P + P P P PP AP P P S P P P
Sbjct: 1711 PMSVPPPPSAPPMPAGPPS-APPPPLPASSAPSVPNP 1746
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 806 SPPTXSXPXRPPXPAPXXPPPXPSHPXRPXPXPLPG 913
S PT P P AP PP P H P PG
Sbjct: 1431 SQPTN--PGAPSNHAPQVVPPAPMHAVAPVQPKAPG 1464
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 33.1 bits (72), Expect = 0.063
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +2
Query: 803 PSPPTXSXPXRPPXPAPXXPPPXPSHPXRPXPXP 904
P+PPT RPP AP P P P P P
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIP 161
Score = 28.7 bits (61), Expect = 1.4
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +2
Query: 803 PSPPTXSXPXRPPXPAPXXPPPXPSHPXRPXPXPL 907
P P + P + P AP P P P + P PL
Sbjct: 172 PPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPL 206
Score = 26.2 bits (55), Expect = 7.2
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 788 PXAXXPSPPTXSXPXRPPXPAPXXPPPXPSHPXRPXP 898
P + +PP S PP P+ PP P+ P + P
Sbjct: 151 PPSPASAPPIPSKA--PPIPSSLPPPAQPAAPVKSPP 185
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.15
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +2
Query: 803 PSPPTXSXPXRPPXPAP-XXPPPXPSHPXRPXPXPLPG 913
P PP + P PAP PPP P P P P PG
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769
Score = 31.1 bits (67), Expect = 0.25
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +2
Query: 788 PXAXXPSPPTXSXPXRPPXPAPXXPPPXPSHPXRPXPXPLP 910
P P+P P PP P PPP P P P P
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.19
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Frame = +2
Query: 794 AXXPSPPTXSXPXRPPXPA-----PXXPPPXPSHPXRPXPXP 904
A P PP S P PP PA P PP P+ P P P P
Sbjct: 445 AAPPLPP--SAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 28.7 bits (61), Expect = 1.4
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +2
Query: 788 PXAXXPSPPTXSXPXRPPXPAPXXPPPXPSHPXRPXPXPLP 910
P + PS P P PP P P P P PLP
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460
Score = 27.9 bits (59), Expect = 2.4
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = +2
Query: 806 SPPTXSXPXRPPXPAPXXPP-PXPSHP-XRPXPXPLP 910
+PP + P PP P PP PS P P PLP
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 31.1 bits (67), Expect = 0.25
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +3
Query: 165 LEEQLYNSVVVADYDSAVE--KSKH--LYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLW 332
L E + V D +S E K KH + + +KS + ++ K+++ NK+N +E A Q W
Sbjct: 110 LAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNW 169
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.3 bits (65), Expect = 0.45
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 836 PPXPAPXXPPPXPSHPXRPXPXPLPG 913
P P P PPP P +P P P PG
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPPG 31
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.3 bits (65), Expect = 0.45
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = +2
Query: 788 PXAXXPSPPTXSXPXRPPXPAPXXPPPXPSHPXRPXPXPLP 910
P + PS P S PP PAP PP P P P P
Sbjct: 1069 PSSEIPSIPAPSGA--PPVPAPSGIPPVPKPSVAAPPVPKP 1107
Score = 30.3 bits (65), Expect = 0.45
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +2
Query: 788 PXAXXPSPPTXSXPXRPPXPAPXXPPPXPSHPXRPXPXPLP 910
P P P S PP PAP PP P P P+P
Sbjct: 1097 PSVAAPPVPKPSVAV-PPVPAPSGAPPVPKPSVAAPPVPVP 1136
Score = 29.9 bits (64), Expect = 0.59
Identities = 15/45 (33%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Frame = +2
Query: 788 PXAXXPSPPTXSXPXRPPXPAPXXPPPXPSH----PXRPXPXPLP 910
P +PP PP P P PP P P P P P P
Sbjct: 1025 PLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAP 1069
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Frame = +2
Query: 788 PXAXXPSPPTXSXPXRPPXPAPXX---PPPXPSHPXRPXPXPLPG 913
P +PP + PP P P P P PS P P P G
Sbjct: 1143 PKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAG 1187
Score = 28.7 bits (61), Expect = 1.4
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +2
Query: 803 PSPPTXSXPXRPPXPAPXXPPPXPSHPXRPXPXPLP 910
P P P PP AP P P P P P P
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAP 1217
Score = 27.5 bits (58), Expect = 3.1
Identities = 14/42 (33%), Positives = 15/42 (35%)
Frame = +2
Query: 788 PXAXXPSPPTXSXPXRPPXPAPXXPPPXPSHPXRPXPXPLPG 913
P A P P S P P+ PP P P P P G
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAG 1225
Score = 27.5 bits (58), Expect = 3.1
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +2
Query: 788 PXAXXPSPPTXSXPXRPPXPAPXXPPPXPSHPXRPXPXPLP 910
P + P P S PP P P PP P+ P P+P
Sbjct: 1193 PPSEAPPVPKPSVGV-PPVPPPSTAPPVPTPSAGLPPVPVP 1232
Score = 26.6 bits (56), Expect = 5.5
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +2
Query: 836 PPXPAPXXPPPXPSHPXRPXPXPLP 910
PP P P PP P P P P
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAP 1155
Score = 26.6 bits (56), Expect = 5.5
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = +2
Query: 803 PSPPTXSXPXRPPXPAPXXPPPXPSHPXRPXPXP 904
P PP + P P A P P P+ P P P
Sbjct: 1209 PVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 26.2 bits (55), Expect = 7.2
Identities = 12/39 (30%), Positives = 15/39 (38%)
Frame = +2
Query: 788 PXAXXPSPPTXSXPXRPPXPAPXXPPPXPSHPXRPXPXP 904
P + P+ P P P + P P PS P P P
Sbjct: 999 PVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVP 1037
Score = 26.2 bits (55), Expect = 7.2
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = +2
Query: 803 PSPPTXSXPXRPPXPAPXXPPPXPSHPXRPXPXPLP 910
P P + P P AP P P + P P P P
Sbjct: 1124 PKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAP 1159
Score = 26.2 bits (55), Expect = 7.2
Identities = 15/43 (34%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Frame = +2
Query: 788 PXAXXPSPPTXSXPXRP-PXPAPXXPPPXPSHPXRPXPXPLPG 913
P P P S P P PA PP P P P P G
Sbjct: 1164 PSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVG 1206
Score = 25.8 bits (54), Expect = 9.6
Identities = 15/46 (32%), Positives = 16/46 (34%)
Frame = +2
Query: 773 TRXXXPXAXXPSPPTXSXPXRPPXPAPXXPPPXPSHPXRPXPXPLP 910
T P A P P S PP P P P P P P+P
Sbjct: 1002 TSPAAPLARVPPVPKLSSKA-PPVPLPSADAPPIPVPSTAPPVPIP 1046
Score = 25.8 bits (54), Expect = 9.6
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = +2
Query: 788 PXAXXPSPPTXSXPXRPPXPAPXXPPPXPSHPXRPXPXP 904
P A P P + PP PAP P S P P P
Sbjct: 1222 PSAGLPPVPVPTAKA-PPVPAPSSEAPSVSTPRSSVPSP 1259
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.1 bits (62), Expect = 1.0
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +2
Query: 809 PPTXSXPXRPPXPAPXXPPPXPSHPXRPXPXPLP 910
PPT + P PAP PPP P LP
Sbjct: 224 PPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLP 257
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 246 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGL 344
K+ +T+ NKL+ ++ + +YAY L LQ L
Sbjct: 35 KREAQLTDTPNKLLTDHDQSASDYAYALKLQQL 67
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 174 QLYNSVVVADYDSAVEKSKHLYEEKKS 254
QL N DY+ E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,879
Number of Sequences: 5004
Number of extensions: 32548
Number of successful extensions: 296
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 519268360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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