Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_D05
         (942 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    33   0.058
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    29   1.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   2.2  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.7  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 33.1 bits (72), Expect = 0.058
 Identities = 21/60 (35%), Positives = 22/60 (36%)
 Frame = -1

Query: 909 GGXGXXXXXXTXXGXXGGGXXGFGXGERXXRVXGKXAGGXQGXGXRGVXRGEXXGXFXGR 730
           G  G         G   GG  GFG G    R  G+  G   G G RG  RG   G   GR
Sbjct: 6   GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGR-GGARGGRGGRGGARGGRGGSSGGR 64


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 20/54 (37%), Positives = 22/54 (40%)
 Frame = -1

Query: 918 GXXGGXGXXXXXXTXXGXXGGGXXGFGXGERXXRVXGKXAGGXQGXGXRGVXRG 757
           G  GG        +  G  GG   GFG G R     G   GG +G G RG  RG
Sbjct: 145 GGRGGSRGGFGGNSRGGFGGGSRGGFGGGSR-----GGSRGGFRG-GSRGGFRG 192


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
 Frame = +3

Query: 756 PPXXPPSCXXPXXHLP-XYRXPXPPFPP 836
           P   PPS   P   LP  Y  P PP PP
Sbjct: 169 PSFQPPSAAAPATSLPSDYNPPPPPPPP 196


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 17/46 (36%), Positives = 17/46 (36%)
 Frame = -1

Query: 870 GXXGGGXXGFGXGERXXRVXGKXAGGXQGXGXRGVXRGEXXGXFXG 733
           G  GGG  GFG G           GG  G G  G   G   G F G
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHG-GHGGFGG 228


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 17/70 (24%), Positives = 18/70 (25%)
 Frame = +1

Query: 727 PTAXKXPXXFPPXNPPXAXPLXPTCPLTXXPXXXXXXXXXXXXSSXXPPXXXPXXXXXXP 906
           PT    P   PP  PP A P  P       P            +        P      P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477

Query: 907 PXXAXXPXPP 936
           P  A  P  P
Sbjct: 478 PAPAPAPAAP 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,122
Number of Sequences: 5004
Number of extensions: 37059
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)