Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_D04
         (882 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1356 + 36627590-36627676,36627869-36628020,36628224-366284...    30   2.8  
04_04_0030 + 22279716-22280052,22280644-22281144,22281369-222816...    29   4.9  
12_02_0313 + 17404002-17406410                                         28   8.6  

>01_06_1356 +
           36627590-36627676,36627869-36628020,36628224-36628471,
           36628585-36628707,36628797-36629842
          Length = 551

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 241 DSATTAAIYDE-LEKGMSPYVGELKSQVPYELPALPSNDRISYLFKYYWN 387
           DS T A  +D+    G+  Y G + +  P  +P+LP +D +    ++YW+
Sbjct: 287 DSKTVAVPFDQSTATGIVKYKG-VPNYAPAAMPSLPPHDDVVTAGRFYWS 335


>04_04_0030 +
           22279716-22280052,22280644-22281144,22281369-22281692,
           22281860-22281945,22282105-22282517,22282612-22282878,
           22282977-22283730
          Length = 893

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +2

Query: 362 HICSSTTGIAVLKLHLDX*SNCLXXLIMQPSRHTTLFHPLWKPXNP 499
           H+CS+  G+  L  H      C+   I+   R  +  HP++K   P
Sbjct: 539 HVCSNDAGVHQLINHWLRTHACMEPFIIAAHRQMSAMHPIFKLLKP 584


>12_02_0313 + 17404002-17406410
          Length = 802

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 286 MSPYVGELKSQVPYELPALPSNDRISYLFKYYWNCGVKATFRXLVEL 426
           ++    ELK+  PYE+P LP ++    +F  Y   G KA  R L+++
Sbjct: 304 LTKIASELKTLEPYEVPKLP-HEECRKIFVRYAFRGEKAKDRELLKI 349


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,345,631
Number of Sequences: 37544
Number of extensions: 242542
Number of successful extensions: 410
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)