Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_D02
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    33   0.041
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    31   0.29 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   2.0  
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.6  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    27   3.6  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   3.6  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    27   4.7  
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    27   4.7  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    26   6.2  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    26   6.2  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    26   6.2  

>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 33.5 bits (73), Expect = 0.041
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +2

Query: 119 MLAASAGVV--ELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSII 274
           ++ A+AG+    LS +  N+D+  K+    L G Y +A      ++ QGKGS+I
Sbjct: 91  VMIANAGIAIPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = +2

Query: 266 SIIQNVVNNLIIDKRRNTMEYCYKLWVGNGQEIVRKYFPLNFRLIMAGNYVKIIYRNYNL 445
           +II   V+N I+D+  +  ++C ++W G   + +R ++  N    ++    K IY +   
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFYS-NLYKKLSHRDAKSIYHHVRR 305

Query: 446 A 448
           A
Sbjct: 306 A 306


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 522 NSSVGSSLPCGRTTECTSRSTTLSTTQYLKMSTTTCNCNSXDRVVY 659
           N +  +S+P   T   +S  T  S+T       TT NC +   V+Y
Sbjct: 495 NCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLY 540



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 522 NSSVGSSLPCGRTTECTSRSTTLSTTQYLKMSTTTCNCNSXDRVVY 659
           N +  +S+P   T   +S  T  S+T       TT NC +   V+Y
Sbjct: 554 NCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLY 599


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 244 FQALTDSTVVVAGEDAVVQFLLEVLV 167
           F  +T   V+V  EDAVV+F+L +LV
Sbjct: 181 FLGVTVQYVMVLPEDAVVEFVLTILV 206


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
 Frame = -3

Query: 382 WEVLSNNFLS--VADPQL---VAVLHGVPSLVNDQVVNYILD 272
           W+VL +++L+  ++ P     V  LHGV + VN  V +YI D
Sbjct: 188 WDVLFHDYLNETLSQPAFSFNVPDLHGVDNKVNQYVFDYIKD 229


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 167 NQDLEEKLYNSILTGDYDSAVRQSLE 244
           + DLE+ +  ++LTGD  SAV+  LE
Sbjct: 551 DSDLEKNITEALLTGDVLSAVKACLE 576


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -1

Query: 198 LLYSFSSRSWLEVSADSSTTPALAASMHIANTTRSFILLGAFQIAFKSA 52
           ++YS++S S +  SA  S   +L +   +AN   SF  L A  I   SA
Sbjct: 465 VVYSYTSSSSMPSSAIPSFNISLISQNAVANAGNSFSPLSAMVIMMMSA 513


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 554 ENNRVYFKIHNTKYNPVLEDEYDDLQLQQSR 646
           + N   + + N K+NPVL  EY    L Q +
Sbjct: 146 KENETPYMVLNNKFNPVLTTEYTQQHLVQCK 176


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 132 ARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAW 242
           AR SLNY ++   + SRRN    ++P      S + W
Sbjct: 622 ARESLNYLKSFNKQLSRRNAPDINNPIADFQNSFQNW 658


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 269 IIQNVVNNLIIDKRRNTMEYCYKLWVGNGQEIVR 370
           +++++  NL I    N +EY   LW  NG  I +
Sbjct: 447 VLKDIFFNLQIGVTFNILEYLRHLWSNNGDAIAK 480


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +2

Query: 443  LALKLGSTTNPSNERIAYGDGVDKHTELVSWKFIT--LWENNRVYFKIHNTKYNPVLEDE 616
            ++L  G  T   N+R+  G G     E+++  F    +W++  +Y K++   Y P++ D 
Sbjct: 892  VSLLRGLLTRDPNQRL--GSGPKDANEVMAHPFFASIVWDD--LYNKLYEPSYKPLINDP 947

Query: 617  YD 622
             D
Sbjct: 948  RD 949


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,205,811
Number of Sequences: 5004
Number of extensions: 62421
Number of successful extensions: 192
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)