Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_C24
         (1022 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    42   1e-04
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    40   6e-04
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    38   0.002
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    38   0.003
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.11 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.80 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.4  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   5.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   7.4  
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    26   7.4  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 22/42 (52%), Positives = 22/42 (52%)
 Frame = -2

Query: 727 GXWGXXWGGGGGXAXGGXGRXGGXGGGXGXGGGGGXGGXXGG 602
           G  G   GGG G A GG G  GG  GG G G  GG GG  GG
Sbjct: 30  GGRGGARGGGRGGARGGRGGRGGARGGRG-GSSGGRGGAKGG 70



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 22/40 (55%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 709 WGGGGGXAXGGXGRXGGXGGGXGXGGG-GGXGGXXGGGXG 593
           +GGG G A GG GR G  GG  G GG  GG GG  GG  G
Sbjct: 28  FGGGRGGARGG-GRGGARGGRGGRGGARGGRGGSSGGRGG 66



 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 19/38 (50%), Positives = 19/38 (50%)
 Frame = -2

Query: 706 GGGGGXAXGGXGRXGGXGGGXGXGGGGGXGGXXGGGXG 593
           GG  G   G  G  GG GGG G   GGG GG  GG  G
Sbjct: 12  GGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGG 49



 Score = 40.3 bits (90), Expect = 4e-04
 Identities = 18/37 (48%), Positives = 19/37 (51%)
 Frame = -2

Query: 703 GGGGXAXGGXGRXGGXGGGXGXGGGGGXGGXXGGGXG 593
           GG G + GG G   G  GG G G GG  GG  GG  G
Sbjct: 9   GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARG 45



 Score = 39.5 bits (88), Expect = 7e-04
 Identities = 20/43 (46%), Positives = 20/43 (46%)
 Frame = -2

Query: 727 GXWGXXWGGGGGXAXGGXGRXGGXGGGXGXGGGGGXGGXXGGG 599
           G  G   GG GG   G  G  GG GG  G G GG  GG  G G
Sbjct: 9   GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRG 51



 Score = 38.3 bits (85), Expect = 0.002
 Identities = 19/37 (51%), Positives = 19/37 (51%)
 Frame = -2

Query: 703 GGGGXAXGGXGRXGGXGGGXGXGGGGGXGGXXGGGXG 593
           G  G   G  G  GG  GG G G GGG GG  GGG G
Sbjct: 6   GSRGGRGGSRGGRGGFNGGRG-GFGGGRGGARGGGRG 41



 Score = 25.8 bits (54), Expect = 9.8
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 636 GGGGXGGGXXGGXGGG 589
           G GG GGG  G  GGG
Sbjct: 24  GRGGFGGGRGGARGGG 39


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 39.9 bits (89), Expect = 6e-04
 Identities = 22/45 (48%), Positives = 23/45 (51%)
 Frame = -2

Query: 727 GXWGXXWGGGGGXAXGGXGRXGGXGGGXGXGGGGGXGGXXGGGXG 593
           G +G   GG  G   G  G  GG GGG G G GGG GG  GG  G
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGLG-GFGGGPGGFGGGPGG 267



 Score = 37.5 bits (83), Expect = 0.003
 Identities = 24/65 (36%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
 Frame = -2

Query: 805 GXGGXGGXXXXXXXXXXXXXXXXXGXGXWGXXWGGGGGXAXGGXGRXGGXGGGXGXGGG- 629
           G GG GG                   G  G   G GGG    G G  G  GG  G GGG 
Sbjct: 206 GFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGP 265

Query: 628 GGXGG 614
           GG GG
Sbjct: 266 GGHGG 270



 Score = 37.1 bits (82), Expect = 0.004
 Identities = 18/39 (46%), Positives = 19/39 (48%)
 Frame = -2

Query: 709 WGGGGGXAXGGXGRXGGXGGGXGXGGGGGXGGXXGGGXG 593
           +GGG G    G G  GG GG  G G   G  G  GGG G
Sbjct: 193 FGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPG 231



 Score = 34.7 bits (76), Expect = 0.021
 Identities = 19/40 (47%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -2

Query: 706 GGGGGXAXGGXGRXGGXGGGXGXGGGG--GXGGXXGGGXG 593
           G GG    GG G   G  GG G G GG  G  G  GGG G
Sbjct: 206 GFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPG 245



 Score = 29.5 bits (63), Expect = 0.80
 Identities = 17/45 (37%), Positives = 17/45 (37%)
 Frame = -2

Query: 727 GXWGXXWGGGGGXAXGGXGRXGGXGGGXGXGGGGGXGGXXGGGXG 593
           G  G   GG    A G      G  GG   G GGG GG   G  G
Sbjct: 162 GLGGLALGGLASHALGNLFHHRGHNGGGFGGFGGGSGGPPPGPGG 206


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 18/36 (50%), Positives = 18/36 (50%)
 Frame = -2

Query: 706 GGGGGXAXGGXGRXGGXGGGXGXGGGGGXGGXXGGG 599
           GG GG   G  G  GG GG    G GGG  G  GGG
Sbjct: 138 GGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGG 173



 Score = 36.7 bits (81), Expect = 0.005
 Identities = 22/47 (46%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -2

Query: 727 GXWGXXWGGGGGXAXG-GXGRXGGXGGGXGXG-GGGGXGGXXGGGXG 593
           G  G   GG GG   G G    GG GGG   G GGG  GG  GG  G
Sbjct: 138 GGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRG 184



 Score = 35.1 bits (77), Expect = 0.016
 Identities = 21/48 (43%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = -2

Query: 727 GXWGXXWGGGGGXAXGGXG---RXGGXGGGXGXGGGGGXGGXXGGGXG 593
           G  G   GG GG + GG G   R G  GG  G   GG  GG  GG  G
Sbjct: 145 GGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGGFRG 192



 Score = 31.5 bits (68), Expect = 0.20
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = -2

Query: 700 GGGXAXGGXGRXGGXGGGXGXGGGGGXGGXXGGGXG 593
           G     G  G  GG GG  G  GG   GG  GG  G
Sbjct: 133 GPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRG 168



 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -3

Query: 642 GXGGGGXGGGXXGGXGGG 589
           G   GG GGG  GG GGG
Sbjct: 156 GNSRGGFGGGSRGGFGGG 173



 Score = 25.8 bits (54), Expect = 9.8
 Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
 Frame = -3

Query: 642 GXGG--GGXGGGXXGGXGGG 589
           G GG  GG GG   GG GGG
Sbjct: 146 GRGGSRGGFGGNSRGGFGGG 165


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 18/40 (45%), Positives = 18/40 (45%)
 Frame = -2

Query: 718 GXXWGGGGGXAXGGXGRXGGXGGGXGXGGGGGXGGXXGGG 599
           G   G GG    GG G  GG GGG G G GG   G    G
Sbjct: 448 GSRGGRGGFGGRGGFGGRGGFGGGRGRGRGGARSGNPNRG 487



 Score = 36.7 bits (81), Expect = 0.005
 Identities = 18/33 (54%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 697 GGXAXGGXGRXGGXGGGXGXGG-GGGXGGXXGG 602
           GG + GG G  GG GG  G GG GGG G   GG
Sbjct: 446 GGGSRGGRGGFGGRGGFGGRGGFGGGRGRGRGG 478



 Score = 36.3 bits (80), Expect = 0.007
 Identities = 16/30 (53%), Positives = 16/30 (53%)
 Frame = -2

Query: 706 GGGGGXAXGGXGRXGGXGGGXGXGGGGGXG 617
           GGG     GG G  GG GG  G GGG G G
Sbjct: 446 GGGSRGGRGGFGGRGGFGGRGGFGGGRGRG 475


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 32.3 bits (70), Expect = 0.11
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +2

Query: 590 PPPSPPXXPPPXPPPPXP 643
           PPP PP   PP  PPP P
Sbjct: 11  PPPPPPGFEPPSQPPPPP 28



 Score = 31.9 bits (69), Expect = 0.15
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +2

Query: 590 PPPSPPXXPPPXPPPPXP 643
           PPP P   PP  PPPP P
Sbjct: 12  PPPPPGFEPPSQPPPPPP 29



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +2

Query: 602 PPXXPPPXPPPP 637
           PP  PPP PPPP
Sbjct: 5   PPGNPPPPPPPP 16


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.80
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 590 PPPSPPXXPPPXPPPP 637
           PPP+P    PP PPPP
Sbjct: 752 PPPAPIMGGPPPPPPP 767



 Score = 29.5 bits (63), Expect = 0.80
 Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 4/20 (20%)
 Frame = +2

Query: 590 PPPSPP----XXPPPXPPPP 637
           PPP PP      PPP PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 590  PPPSPPXXPPPXPPPPXP 643
            PPP P   PPP   PP P
Sbjct: 1707 PPPPPMSVPPPPSAPPMP 1724



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
 Frame = +2

Query: 590  PPPSPPXXP---PPXPPPPXP 643
            PPPS P  P   P  PPPP P
Sbjct: 1716 PPPSAPPMPAGPPSAPPPPLP 1736


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
 Frame = +2

Query: 590 PPPSPPXXPP-PXPPPPXP 643
           PPPSP   PP P   PP P
Sbjct: 150 PPPSPASAPPIPSKAPPIP 168


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 590 PPPSPPXXPPPXPPP 634
           P P+PP  PPP  PP
Sbjct: 234 PLPAPPPPPPPTLPP 248


>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 664 GGXGGGXGXGGGGGXGGXXGGGXG 593
           GG GG    GG G  G   GGG G
Sbjct: 508 GGRGGNYRRGGYGRGGFRRGGGYG 531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,778,683
Number of Sequences: 5004
Number of extensions: 20445
Number of successful extensions: 310
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 533248662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)