Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_C24
         (1022 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.48 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   0.83 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.48
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 593 PPSPPXXPPPXPPPPXP 643
           PP+P   PPP  PP  P
Sbjct: 39  PPNPSQGPPPGGPPGAP 55


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 25.4 bits (53), Expect = 0.83
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -2

Query: 679 GXGRXGGXGGGXGXGGGGGXGG 614
           G GR  G GG  G GG  G  G
Sbjct: 81  GKGRGHGKGGSRGRGGNRGRTG 102


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -2

Query: 700  GGGXAXGGXGRXGGXGGGXGXGGGG 626
            GGG +  G G  GG GG       G
Sbjct: 1705 GGGGSLAGLGGLGGLGGAAEASAAG 1729


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -2

Query: 700  GGGXAXGGXGRXGGXGGGXGXGGGG 626
            GGG +  G G  GG GG       G
Sbjct: 1701 GGGGSLAGLGGLGGLGGAAEASAAG 1725


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
 Frame = -2

Query: 706 GGGGGXAXGGX--GRXGGX---GGGXGXGGGGGXG 617
           GG G  + GG   G  GG    G   G GGGGG G
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNG-GGGGGLG 53



 Score = 22.2 bits (45), Expect = 7.8
 Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
 Frame = -2

Query: 682 GGXGRXGGXGGGXGXGGG----GGXGGXXGGGXG 593
           GG G     G   G  GG    G   G  GGG G
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGGGLG 53


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 614  PPPXPPPP 637
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 599 SPPXXPPPXPPP 634
           +PP   PP PPP
Sbjct: 337 TPPKPAPPPPPP 348



 Score = 22.6 bits (46), Expect = 5.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 614 PPPXPPPPXP 643
           P P PPPP P
Sbjct: 339 PKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 605 PXXPPPXPPPP 637
           P  P P PPPP
Sbjct: 338 PPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,012
Number of Sequences: 438
Number of extensions: 3394
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 34104798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)