Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_C22
         (993 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.26 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   1.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   9.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.26
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 669 PPXXGXPTPPLPPXPXXXPXPPTPS 743
           PP  G P PP+P        PP P+
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPPLPN 434


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 385  PPPPPPPXXS 414
            PPPPPPP  S
Sbjct: 1355 PPPPPPPPSS 1364


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 385 PPPPPPPXXSPXP 423
           P PPPPP  S  P
Sbjct: 341 PAPPPPPPSSSGP 353



 Score = 21.8 bits (44), Expect = 9.9
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +1

Query: 385 PPPPPPPXXSPXPPXPXAXK 444
           PP P PP   P    P + K
Sbjct: 338 PPKPAPPPPPPSSSGPDSAK 357


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 365  NXXSSGXPPXPPPP 406
            N   SG P  PPPP
Sbjct: 1850 NIPVSGSPEPPPPP 1863


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,826
Number of Sequences: 438
Number of extensions: 6734
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32895408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)