Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_C21
(908 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 34 0.032
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 33 0.074
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 30 0.39
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 30 0.52
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.52
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 29 0.69
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 29 0.91
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 29 0.91
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 29 0.91
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S... 29 1.2
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 28 2.1
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 27 3.7
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 27 3.7
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 27 4.9
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 26 6.4
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 26 8.5
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 26 8.5
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 33.9 bits (74), Expect = 0.032
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 90 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYT 185
FS DGKY T T+D ++K+WD T ++ ++
Sbjct: 368 FSPDGKYLVTGTEDRQIKLWDLSTQKVRYVFS 399
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 32.7 bits (71), Expect = 0.074
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 72 NMAEAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEY 182
N+ F DGK+ +T ++DG +K+WD +++ Y
Sbjct: 85 NVTAIAFHCDGKWLATSSEDGTVKVWDMRAPSVQRNY 121
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 30.3 bits (65), Expect = 0.39
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 90 FSEDGKYYSTITKDGRLKIWD 152
FS DGKY +T +D +++IWD
Sbjct: 342 FSPDGKYLATGVEDQQIRIWD 362
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +3
Query: 90 FSEDGKYYSTITKDGRLKIWDTE--TNVLKQEY 182
FS DGKY + + D +K+W+ + +NV Y
Sbjct: 466 FSPDGKYLVSGSLDNTIKLWELQCVSNVAPSMY 498
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 29.9 bits (64), Expect = 0.52
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +3
Query: 93 SEDGKYYSTITKDGRLKIWDTET-NVLKQEYTP 188
+ DG+Y T D LK+WD T L YTP
Sbjct: 274 NRDGRYMVTAGADSLLKVWDLRTYKELHSYYTP 306
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.52
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 835 PXPXPTVXXHXPXXXPGPTPPPAP 906
P P P V P P P PPPAP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAP 756
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 29.5 bits (63), Expect = 0.69
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +3
Query: 90 FSEDGKYYSTITKDGRLKIWDTETN 164
FS DG+Y ++++D L++W E++
Sbjct: 202 FSSDGRYLCSVSEDRTLRLWSIESS 226
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/64 (25%), Positives = 32/64 (50%)
Frame = +3
Query: 315 VLGTTNGKLLIYSISQAKIINVWVPAKHFSAKVTXLHWSTKYGLYSCTKDSXVYEWNXED 494
++G+ G L +Y+I ++ ++VW F A ++ +H + S +D + + D
Sbjct: 481 LIGSRTGSLALYNIGESNYLSVWRRIHEFDA-ISSIH------IKSSKRDYLLIQTVGRD 533
Query: 495 GSVN 506
G VN
Sbjct: 534 GYVN 537
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 29.1 bits (62), Expect = 0.91
Identities = 13/65 (20%), Positives = 31/65 (47%)
Frame = +3
Query: 45 VMRXVPKQ*NMAEAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQ 224
+M P ++ +S DG + + +G ++IW+ +T + +Y H +C+
Sbjct: 194 IMELSPTTYEVSSLAYSSDGGFLAIARVNGFVEIWNRKTKNNRCDY--KFHHDGDISCMA 251
Query: 225 WTTVS 239
W+ ++
Sbjct: 252 WSPIN 256
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 29.1 bits (62), Expect = 0.91
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 90 FSEDGKYYSTITKDGRLKIWDTE 158
FS+DG+ + + + D +K+WDTE
Sbjct: 318 FSQDGRSFLSTSFDKTIKLWDTE 340
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 29.1 bits (62), Expect = 0.91
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +3
Query: 321 GTTNGKLLIYSISQAKIINVWVPAKHFSAKVTXLHWSTKYGLYSCTKDSXVYEWNXEDGS 500
G+ +G + ++ S+ W H V L +S + + SC D VY N +DG
Sbjct: 83 GSGDGAVKLWDASER--CERWTSKAH-EGIVRGLVFSNQGDVLSCASDRYVYMLNKQDGK 139
Query: 501 VNQPY 515
V + Y
Sbjct: 140 VKRSY 144
>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 93 SEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHL-TSPPTCLQW 227
+E G + ++ DG LKI DT T + ++ D + SP + +QW
Sbjct: 68 NESGTEFISVGSDGVLKIADTSTGRVSSKWIVDKNKEISPYSVVQW 113
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +3
Query: 90 FSEDGKYYSTITKDGRLKIWDTET-NVLKQEYTPDL--HLTSPPT 215
FS+ G++ T + DG ++ WD T +++ TP + LT PT
Sbjct: 580 FSDTGRWLVTASLDGTIRTWDLPTGHLIDSISTPSVCTSLTFAPT 624
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 84 AMFSEDGKYYSTITKDGRLKIWDTET 161
A FS DG+ +T + D +++WD +T
Sbjct: 395 ASFSPDGRCIATASFDSSVRLWDGKT 420
Score = 26.6 bits (56), Expect = 4.9
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +3
Query: 402 SAKVTXLHWSTKYGLYSCTKDSXVYEWNXEDG 497
+A +T + W + +YS + D + W+ +DG
Sbjct: 269 TAPITCVRWGGQNWIYSSSYDKTIRIWDAKDG 300
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 27.1 bits (57), Expect = 3.7
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 75 MAEAMFSEDGKYYSTITKDGRLKIWD 152
++ +S DG+ T DG++K+WD
Sbjct: 342 LSTLQYSSDGQRIITGADDGKIKVWD 367
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 26.6 bits (56), Expect = 4.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 90 FSEDGKYYSTITKDGRLKIWD 152
FS+DG Y + +D L++WD
Sbjct: 306 FSQDGNYLLSRGEDNALRVWD 326
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 26.2 bits (55), Expect = 6.4
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +3
Query: 93 SEDGKYYSTITKDGRLKIWDTET 161
S+DG+ ++ ++D +K+WD+ T
Sbjct: 474 SKDGRIIASASQDKTIKLWDSST 496
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.8 bits (54), Expect = 8.5
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +3
Query: 72 NMAEAMFSEDGKYYSTITKDGRLKIW 149
N+ + + S+DG+ T + D +K+W
Sbjct: 218 NVRDILISDDGRTILTASSDATIKLW 243
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 8.5
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +3
Query: 75 MAEAMFSEDGKYYSTITKDGRLKIWDTETN--VLKQEYTPDLHLTSPP--TCLQWTT 233
+ + +S +G Y + K G + IWDT+++ V++ Y+ + L P L +TT
Sbjct: 233 VTDISWSSNGMYIAASFKKGGILIWDTQSHEVVVELPYSTVVALAWQPFENVLSFTT 289
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,170,826
Number of Sequences: 5004
Number of extensions: 58846
Number of successful extensions: 221
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -