Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_C21
         (908 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80447-3|AAB37807.2|  910|Caenorhabditis elegans Hypothetical pr...    35   0.092
U88311-6|AAB42347.1|  382|Caenorhabditis elegans Hypothetical pr...    34   0.12 
AF039711-10|AAB96707.2|  567|Caenorhabditis elegans Yeast prp (s...    34   0.12 
Z68315-3|CAA92670.1|  430|Caenorhabditis elegans Hypothetical pr...    33   0.21 
U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z78544-3|CAB01760.1|  395|Caenorhabditis elegans Hypothetical pr...    31   1.5  
Z37139-8|CAA85487.1|  376|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AF106576-4|AAC78176.1|  473|Caenorhabditis elegans Hypothetical ...    29   4.6  
U42436-6|AAM15564.1|  615|Caenorhabditis elegans Not-like (yeast...    29   6.1  
U42436-5|AAF99894.2|  796|Caenorhabditis elegans Not-like (yeast...    29   6.1  
AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin...    29   6.1  
Z81563-2|CAB04564.1|  181|Caenorhabditis elegans Hypothetical pr...    28   8.0  
U42835-5|AAO61444.1|  517|Caenorhabditis elegans Uncoordinated p...    28   8.0  
U42835-4|AAA83588.1|  611|Caenorhabditis elegans Uncoordinated p...    28   8.0  
AF324437-1|AAK11613.1|  611|Caenorhabditis elegans UNC-78 protein.     28   8.0  

>U80447-3|AAB37807.2|  910|Caenorhabditis elegans Hypothetical
           protein F55F8.3 protein.
          Length = 910

 Score = 34.7 bits (76), Expect = 0.092
 Identities = 20/68 (29%), Positives = 36/68 (52%)
 Frame = +3

Query: 45  VMRXVPKQ*NMAEAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQ 224
           VM+       +  A +S DG   +T  +DG++KIW++ ++      T D H TS  T ++
Sbjct: 353 VMKQQAHSLRITTAEYSPDGSLMATGAEDGKVKIWNSRSSFC--TVTFDEH-TSGVTAVK 409

Query: 225 WTTVSQSV 248
           WT   +++
Sbjct: 410 WTQSGRAI 417


>U88311-6|AAB42347.1|  382|Caenorhabditis elegans Hypothetical
           protein C10H11.8 protein.
          Length = 382

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +3

Query: 81  EAMFSEDGKYYSTITKDGRLKIWDTETN 164
           +A+FS +G+Y  T   D ++KIWD E N
Sbjct: 330 DAIFSSEGRYIFTGGNDNQVKIWDVENN 357


>AF039711-10|AAB96707.2|  567|Caenorhabditis elegans Yeast prp
           (splicing factor) relatedprotein 17 protein.
          Length = 567

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +3

Query: 81  EAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQW 227
           E  F+ +G  + + + D  +K+WDTET  +KQ +    H    P CL++
Sbjct: 324 EVAFNNEGTEFLSASFDRYVKLWDTETGQVKQRF----HTGHVPYCLKY 368


>Z68315-3|CAA92670.1|  430|Caenorhabditis elegans Hypothetical
           protein F28C6.3 protein.
          Length = 430

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 72  NMAEAMFSEDGKYYSTITKDGRLKIWDTETN 164
           ++ +  +SE+ + Y T +KDG +KIWD  +N
Sbjct: 261 SVTDVHYSENARLYVTASKDGHVKIWDGVSN 291



 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 72  NMAEAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYT 185
           ++  A F+++GKY  T   D  +K+W+  TN     YT
Sbjct: 305 SICSAKFTKNGKYILTSGMDSIVKLWELSTNRCLIVYT 342


>U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical
           protein T10F2.4 protein.
          Length = 492

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +3

Query: 90  FSEDGKYYSTITKDGRLKIWD 152
           FSE+G Y +T ++DG +K+WD
Sbjct: 388 FSENGYYLATGSEDGEVKLWD 408


>Z78544-3|CAB01760.1|  395|Caenorhabditis elegans Hypothetical
           protein K04G11.4 protein.
          Length = 395

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
 Frame = +3

Query: 75  MAEAMFSEDGKYYSTITKDGRLKIWDTET-----NVLKQEYTPDLHLTSPP 212
           ++   F+ DG Y ++ + DG ++IWD+ T      ++ +E+ P  H+   P
Sbjct: 235 VSSVCFNRDGAYLASGSYDGIVRIWDSTTGTCVKTLIDEEHPPITHVKFSP 285


>Z37139-8|CAA85487.1|  376|Caenorhabditis elegans Hypothetical
           protein C14B1.4 protein.
          Length = 376

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 75  MAEAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYT 185
           +A   FS +GKY      D  LK+WD       ++YT
Sbjct: 259 VAFVKFSPNGKYILASNLDSTLKLWDFSKGKTLKQYT 295



 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 72  NMAEAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYT 185
           +++ A FS  GKY  T + D  +KIW+ +  + ++  T
Sbjct: 89  SISSAKFSPCGKYLGTSSADKTVKIWNMDHMICERTLT 126


>AF106576-4|AAC78176.1|  473|Caenorhabditis elegans Hypothetical
           protein W07E6.2 protein.
          Length = 473

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 330 NGKLLIYSISQAKIINVWVPAKHFSAKVTXLHWSTKYGLYSCTKDSXVYEWNXEDG 497
           +G + I+   Q  ++     + H +A VT L W  +  +YS ++D  V  W  +DG
Sbjct: 216 DGNIFIWDTVQGTVVRCL--SGH-TASVTCLRWGGEGLIYSGSQDRTVKMWRADDG 268


>U42436-6|AAM15564.1|  615|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 4, isoform b protein.
          Length = 615

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +3

Query: 318 LGTTNGKLLIYSISQAKIINVWVPAKHFSAKVTXLHWSTKYGLYSCTKDSXVYE 479
           L   + +L   S S+   + +  PAKH  A    + W    GL S +  S + E
Sbjct: 201 LDVNDDRLARTSFSENDYLGIPAPAKHQEAPAPLMQWEALLGLSSPSAQSTIVE 254


>U42436-5|AAF99894.2|  796|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 4, isoform a protein.
          Length = 796

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +3

Query: 318 LGTTNGKLLIYSISQAKIINVWVPAKHFSAKVTXLHWSTKYGLYSCTKDSXVYE 479
           L   + +L   S S+   + +  PAKH  A    + W    GL S +  S + E
Sbjct: 382 LDVNDDRLARTSFSENDYLGIPAPAKHQEAPAPLMQWEALLGLSSPSAQSTIVE 435


>AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin
            related protein 2 protein.
          Length = 1335

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 75   MAEAMFSEDGKYYSTI-TKDGRLKIWDTETNVL 170
            +A   FSEDGKY +T   +DG++  + T  + L
Sbjct: 1248 IAAVAFSEDGKYLATYGAEDGKINFFQTSQSFL 1280


>Z81563-2|CAB04564.1|  181|Caenorhabditis elegans Hypothetical
           protein K04H8.2 protein.
          Length = 181

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
 Frame = +3

Query: 309 CIVLGTTNGKLLIYSISQAKIINVWVPAKHFSAKVTXLHWSTKYGLYSCTKDSXVYEWNX 488
           CIV G  NG   ++ I   K+  +     H+   V      T   L SC   +     N 
Sbjct: 81  CIVAGFENGTCKLFEIG--KLSTIKRLNSHYGKMVAV---KTVTNLTSCDYST---NGNV 132

Query: 489 EDGSVN--QPYNISIENNT 539
             G +N  QPYN++I  NT
Sbjct: 133 LQGFINHDQPYNVTISQNT 151


>U42835-5|AAO61444.1|  517|Caenorhabditis elegans Uncoordinated
           protein 78, isoform b protein.
          Length = 517

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 93  SEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLT 203
           S DGK   +   +G +  WD  T +  + + PD+H T
Sbjct: 333 SADGKTLFSADAEGHINSWDISTGISNRVF-PDVHAT 368


>U42835-4|AAA83588.1|  611|Caenorhabditis elegans Uncoordinated
           protein 78, isoform a protein.
          Length = 611

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 93  SEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLT 203
           S DGK   +   +G +  WD  T +  + + PD+H T
Sbjct: 333 SADGKTLFSADAEGHINSWDISTGISNRVF-PDVHAT 368


>AF324437-1|AAK11613.1|  611|Caenorhabditis elegans UNC-78 protein.
          Length = 611

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 93  SEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLT 203
           S DGK   +   +G +  WD  T +  + + PD+H T
Sbjct: 333 SADGKTLFSADAEGHINSWDISTGISNRVF-PDVHAT 368


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,868,230
Number of Sequences: 27780
Number of extensions: 347737
Number of successful extensions: 1150
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)