Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_C20
         (1112 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   0.059
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.30 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   4.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect(2) = 0.059
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 478  KKXPXPPPPPP 510
            ++ P PPPPPP
Sbjct: 1352 QQQPPPPPPPP 1362



 Score = 23.8 bits (49), Expect(2) = 0.059
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 493  PPPPPPXPT 519
            PPPPPP P+
Sbjct: 1355 PPPPPPPPS 1363



 Score = 23.8 bits (49), Expect = 2.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 342  PPPPPPP 362
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 342  PPPPPPP 362
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 22.2 bits (45), Expect = 8.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 460  RXXXKXKKXPXPPPPP 507
            R   + ++ P PPPPP
Sbjct: 1347 RTAWRQQQPPPPPPPP 1362


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.30
 Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
 Frame = +2

Query: 152 PXPXLXXPXP-PXSXPXPPLXPPPPXPXXXPPPXXP 256
           P      P P P   P  P    PP P   PPP  P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51



 Score = 26.2 bits (55), Expect = 0.52
 Identities = 15/45 (33%), Positives = 16/45 (35%)
 Frame = +3

Query: 129 PXPXXXPXPXPXSXXPPPPXXXPXPPXXPXPPPPXXXPPXXPLPP 263
           P P   P   P    PP P   P PP  P   PP   P    + P
Sbjct: 25  PSPHQSPQA-PQRGSPPNPSQGP-PPGGPPGAPPSQNPSQMMISP 67



 Score = 25.4 bits (53), Expect = 0.91
 Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = +1

Query: 487 PXPPPPPPXPTXXXPPHXX-XPPPPXPXGRXAPP 585
           P P   P  P    PP+    PPP  P G  APP
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPG--APP 56



 Score = 25.0 bits (52), Expect = 1.2
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 188 SXPXPPLXPPPPXPXXXPPPXXP 256
           S P P   PPP  P   PP   P
Sbjct: 38  SPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 24.6 bits (51), Expect = 1.6
 Identities = 12/40 (30%), Positives = 12/40 (30%)
 Frame = +3

Query: 147 PXPXPXSXXPPPPXXXPXPPXXPXPPPPXXXPPXXPLPPP 266
           P P P     P       PP     PPP   P   P   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 24.6 bits (51), Expect = 1.6
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +1

Query: 130 PXPXXXPPXPXXLXSXPPPLXXXPPPXPPXPXPPXXXP 243
           P P   P  P      PP     PPP  P   PP   P
Sbjct: 25  PSPHQSPQAPQR--GSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 8.5
 Identities = 11/40 (27%), Positives = 11/40 (27%)
 Frame = +1

Query: 136 PXXXPPXPXXLXSXPPPLXXXPPPXPPXPXPPXXXPPXXP 255
           P    P P       P       P  P   PP   PP  P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 487 PXPPPPPPXPTXXXP 531
           P P PPPP P+   P
Sbjct: 339 PKPAPPPPPPSSSGP 353


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 487  PXPPPPPP 510
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -3

Query: 255 GXXGGGXXXGXGGGGXRGGXGXEXG 181
           G  GG    G   GG  GG G   G
Sbjct: 33  GASGGSIVVGANNGGGGGGLGIASG 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.309    0.146    0.534 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,799
Number of Sequences: 438
Number of extensions: 13241
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 37475811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)