Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_C18
         (972 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.3  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   9.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 11/43 (25%), Positives = 15/43 (34%)
 Frame = +3

Query: 504 IXXPAPRTXPPXXRFXPPPXPXSAXTAXXPXRXDTSGPXPXXP 632
           +  PA    PP      PP P  +  +  P   +  G  P  P
Sbjct: 401 VRSPAGGQLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMP 443



 Score = 21.8 bits (44), Expect = 9.6
 Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
 Frame = +1

Query: 520 REPXPXLPXSXPPPPXHPPXXPAXXHDXTPLAPPPXXPX-PXXFPPXPXPPXAXXXRXP 693
           ++  P +      P    P      H  +P AP    P  P   PP   PP A   + P
Sbjct: 3   QQKQPIITQQSQQPSSGAPGPQPSPHQ-SPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 144 DSQLDIFVGSTIGSFKHVKYYTDNTKNNTKCI 239
           D+ +D+ +  +I   K ++   DN KN  KC+
Sbjct: 83  DTDMDMDLKDSIR--KIIRQCVDNAKNEDKCL 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,652
Number of Sequences: 438
Number of extensions: 8824
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32048835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)