Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_C17
         (976 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    27   0.26 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.8  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 27.1 bits (57), Expect = 0.26
 Identities = 18/56 (32%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
 Frame = +2

Query: 500 PXPPPXISPRRXXAXPXPP*PPXXPPPPPPXXXXPVSPXPPPXPXAP---PXPTPP 658
           P PP     R   A P    P   P P PP       P   P    P   P P PP
Sbjct: 109 PRPPHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPP 164


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +2

Query: 554 P*PPXXPPPPPPXXXXPVSPXPPPXPXAPPXPTP 655
           P P     P  P    P +P   P P  PP   P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 24.2 bits (50), Expect = 1.8
 Identities = 12/32 (37%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
 Frame = +2

Query: 572 PPPPPPXXXXPVSPX--PPPXPXAPPXPTPPP 661
           P P P     P +P    PP P   P P  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 23.0 bits (47), Expect = 4.2
 Identities = 14/47 (29%), Positives = 15/47 (31%)
 Frame = +2

Query: 485 PXXXXPXPPPXISPRRXXAXPXPP*PPXXPPPPPPXXXXPVSPXPPP 625
           P    P P P  SP +    P    PP     PPP       P   P
Sbjct: 16  PSSGAPGPQP--SPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 560 PPXXPPPPPPXXXXPVS 610
           P   PPPPPP    P S
Sbjct: 339 PKPAPPPPPPSSSGPDS 355



 Score = 22.6 bits (46), Expect = 5.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 560 PPXXPPPPPP 589
           PP   PPPPP
Sbjct: 338 PPKPAPPPPP 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,075
Number of Sequences: 438
Number of extensions: 4125
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32169774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)