Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_C15
(885 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434 33 0.23
08_02_0759 - 20851828-20851932,20852190-20852285,20853231-208533... 29 3.8
01_03_0308 - 14883728-14884120 29 3.8
01_01_0880 + 6903535-6903932,6904931-6905022,6905601-6905680,690... 29 3.8
05_01_0384 + 2997465-2999777,2999960-3000035,3003027-3003102,300... 29 5.0
02_04_0470 - 23183925-23184743,23184929-23185153 29 5.0
03_03_0204 + 15436660-15437244,15437355-15437632,15438792-154390... 29 6.6
02_02_0272 - 8452994-8453187,8453850-8454975 29 6.6
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 28 8.7
>03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434
Length = 418
Score = 33.5 bits (73), Expect = 0.23
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = -3
Query: 379 GMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMAL 263
G P R+SP L+ PAEAALS RSL S P ++
Sbjct: 138 GEEPPRRVSPAAVVLAVLLPAEAALSFIRSLSSLAPFSI 176
>08_02_0759 -
20851828-20851932,20852190-20852285,20853231-20853314,
20853411-20853481,20853568-20853655,20853745-20853936,
20854044-20854931
Length = 507
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 388 GEQLGVAGKVNLFHNNNHDLSAKGVRDQELAQRHPQRA 501
GE V + L + DL A + QEL++ HPQ+A
Sbjct: 108 GESAPVGAPIALLAESEDDLQAALAKAQELSKAHPQQA 145
>01_03_0308 - 14883728-14884120
Length = 130
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -3
Query: 529 QSAAQRVEVGRVGDGAGRVPDRERPWRSGRGCYCGTS*PCLRR 401
Q+ + E+G G AGR P WR R C C +S P + R
Sbjct: 62 QTTERAPEIG--GAVAGRKPSLAELWRRHRRCSCNSSCPPIER 102
>01_01_0880 +
6903535-6903932,6904931-6905022,6905601-6905680,
6905885-6905926,6906001-6906128,6906530-6906710,
6906801-6906979,6907469-6907717,6907950-6908193
Length = 530
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 416 TLPATPSCSPKPRNAGPGQAQPVP 345
TLP PS SP P +A P + P P
Sbjct: 25 TLPFLPSPSPSPTSASPSPSPPAP 48
>05_01_0384 +
2997465-2999777,2999960-3000035,3003027-3003102,
3003571-3004442,3004592-3004773,3005206-3005295,
3005388-3005675,3005776-3005997,3006053-3006133,
3006634-3006861
Length = 1475
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = -3
Query: 469 DRERPWRSGRGCYCGTS*PCLRRRAAPRSPGMRVPVRLSPCPFTLSRASPAEA 311
D E PW G C+ T RRR PR P SP T ++ + A A
Sbjct: 281 DDECPWAFGDRCFIATPPRHRRRRRQPRVPTDDDKQEASPAAATTNQDAAAAA 333
>02_04_0470 - 23183925-23184743,23184929-23185153
Length = 347
Score = 29.1 bits (62), Expect = 5.0
Identities = 30/90 (33%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Frame = -3
Query: 391 PRSPGMRVPVRLSPCPFTLSRASPAEAAL-----SLWRSLKSADPMALSTFLSLPVRGTF 227
P PGMRV R SP +RA P +L S W P A ST S R
Sbjct: 162 PAQPGMRVAHRWSPAK---ARALPPPPSLRYPSRSSWDGADLDGPTAASTTTSRRRRRHH 218
Query: 226 R-AAPEVPSEFTVKLPACLRARVATCLPLA 140
R P S + + C RA +A L A
Sbjct: 219 RLVPPPAASPLSNRQRHCCRAAIAGALESA 248
>03_03_0204 +
15436660-15437244,15437355-15437632,15438792-15439068,
15439160-15439405,15440853-15441134
Length = 555
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 397 AAP-RSPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKS 281
AAP ++P P ++P P + +PA A+ WR+ K+
Sbjct: 66 AAPEKAPVAAAPAPVAPAPAATKQVAPARWAVDSWRTKKA 105
>02_02_0272 - 8452994-8453187,8453850-8454975
Length = 439
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -3
Query: 364 VRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRG 233
+RL P P +L RA+ A + WR L +ADP L F + RG
Sbjct: 20 LRLPPRPSSLPRAA---AVCARWRRLVTADPAFLRRFRAHHRRG 60
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 367 PVRLSPCPFTLSRASPAEAA 308
P+RLSP P ++SR P+ AA
Sbjct: 153 PIRLSPSPRSMSRTRPSSAA 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,162,736
Number of Sequences: 37544
Number of extensions: 387713
Number of successful extensions: 1426
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1424
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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