Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_C13
(943 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 33 0.077
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.10
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 31 0.18
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.18
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.41
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.72
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.95
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.95
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 2.9
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 2.9
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 3.8
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.4
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 32.7 bits (71), Expect = 0.077
Identities = 19/41 (46%), Positives = 19/41 (46%)
Frame = -2
Query: 642 GGRGGXXKTXAGGGGXXRLXGPGXGGXGXGFXRGGXXGGRG 520
GGRGG G G G G GG G RGG GGRG
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGARGG-GRGGARGGRG 48
Score = 31.5 bits (68), Expect = 0.18
Identities = 25/69 (36%), Positives = 28/69 (40%)
Frame = -2
Query: 642 GGRGGXXKTXAGGGGXXRLXGPGXGGXGXGFXRGGXXGGRGIAXXPXVGGXXPDXGXXXT 463
G RGG + G GG G G G G G RGG GRG A G G +
Sbjct: 6 GSRGGRGGSRGGRGGFN--GGRGGFGGGRGGARGG---GRGGARGGRGGRGGARGGRGGS 60
Query: 462 XPPRSGARG 436
R GA+G
Sbjct: 61 SGGRGGAKG 69
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.3 bits (70), Expect = 0.10
Identities = 29/92 (31%), Positives = 31/92 (33%), Gaps = 2/92 (2%)
Frame = +1
Query: 385 IPQRPAXGGPXXGXSSXSSRPRXGGXGXXXAXIRPXPTHXRXXRYPPXPXXXPPXEPAXP 564
IP R A P G +S +S P P P P P PP P
Sbjct: 395 IPGRSAPALPPLGNASRTSTPPV-----------PTPPSLPPSAPPSLPPSAPPSLPMGA 443
Query: 565 PAXP--RAXQPXXPPXPXGRFXXPPTTPPXHP 654
PA P P PP P G PP PP P
Sbjct: 444 PAAPPLPPSAPIAPPLPAGMPAAPP-LPPAAP 474
Score = 29.5 bits (63), Expect = 0.72
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Frame = +1
Query: 520 PPXPXXXPPXEPAXP-PAXPRAXQPXXPPXPXGRFXXPPTTPP 645
PP P P P P+ P PP G PP +PP
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPP 272
Score = 27.9 bits (59), Expect = 2.2
Identities = 28/91 (30%), Positives = 30/91 (32%), Gaps = 5/91 (5%)
Frame = +1
Query: 388 PQRPAXGGPXXGXSSXSSR--PRXGGXGXXXAXIRPXPTHXRXXRYPPXPXXXPPXEPAX 561
P R G P G S +S P A P P R PP P P
Sbjct: 317 PSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQP 376
Query: 562 PP-AXPRAXQ--PXXPPXPXGRFXXPPTTPP 645
PP + RA P PP GR P PP
Sbjct: 377 PPLSSSRAVSNPPAPPPAIPGR--SAPALPP 405
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/36 (44%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Frame = +1
Query: 553 PAXPPAXPRAXQPXXPP-XPXGRFXXPPT-TPPXHP 654
PA PPA P P PP R PP TPP P
Sbjct: 389 PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLP 424
Score = 25.8 bits (54), Expect = 8.8
Identities = 15/53 (28%), Positives = 16/53 (30%)
Frame = +1
Query: 487 PXPTHXRXXRYPPXPXXXPPXEPAXPPAXPRAXQPXXPPXPXGRFXXPPTTPP 645
P P R PP PP PR+ P P PP PP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 31.5 bits (68), Expect = 0.18
Identities = 17/39 (43%), Positives = 18/39 (46%)
Frame = -2
Query: 642 GGRGGXXKTXAGGGGXXRLXGPGXGGXGXGFXRGGXXGG 526
GG GG + GGG G GG GF RGG GG
Sbjct: 152 GGFGGNSRGGFGGGSRGGFGGGSRGGSRGGF-RGGSRGG 189
Score = 27.9 bits (59), Expect = 2.2
Identities = 21/51 (41%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = -2
Query: 639 GRGGXXKTXAG-GGGXXRLXGPGXGGXGXGFXRGGXXGG-RGIAXXPXVGG 493
GRGG G GG G GG G G RGG GG RG + GG
Sbjct: 136 GRGGRGGFRGGRGGSRGGFGGNSRGGFGGG-SRGGFGGGSRGGSRGGFRGG 185
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.5 bits (68), Expect = 0.18
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +1
Query: 529 PXXXPPXEPAXPPAXPRAXQPXXPPXPXGRFXXPPTTPPXHP 654
P P P PPA P PP P PP PP P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 30.7 bits (66), Expect = 0.31
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = +1
Query: 475 AXIRPXPTHXRXXRYPPXPXXXPPXEPAXPPAXPRAXQPXXPPXP 609
A I P P PP P P P PP A P PP P
Sbjct: 738 AVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 28.7 bits (61), Expect = 1.3
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Frame = +1
Query: 520 PPXPXXXPPXEPAXPPAXPRA---XQPXXPPXPXGRFXXPPTTPPXHP 654
PP P PA P P A P PP P G P PP P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +2
Query: 476 PXSGXXPPTXGXXAIPRPPXXPPRXNPXPXPP 571
P PT IP PP P P P PP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 30.3 bits (65), Expect = 0.41
Identities = 17/39 (43%), Positives = 17/39 (43%)
Frame = -2
Query: 636 RGGXXKTXAGGGGXXRLXGPGXGGXGXGFXRGGXXGGRG 520
RG GGG L GP G G G R G GGRG
Sbjct: 103 RGPLFGPRIGGGHHGPLHGPHGGFGGRGGGRMGGRGGRG 141
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.5 bits (63), Expect = 0.72
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Frame = +1
Query: 520 PPXPXXXPPXEPAXP----PAXPRAXQPXXPPXPXGRFXXPPTTPP 645
PP P PP + P PA P P P P PP PP
Sbjct: 158 PPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP 203
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = +1
Query: 487 PXPTHXRXXRYPPXPXXXPPXEPAXPPAXPRAXQPXXPPXP 609
P P+ P P PP P+ P A P P PP P
Sbjct: 166 PIPSSLPPPAQPAAPVKSPPSAPSLPSAVP-PMPPKVPPPP 205
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/49 (28%), Positives = 18/49 (36%)
Frame = +1
Query: 520 PPXPXXXPPXEPAXPPAXPRAXQPXXPPXPXGRFXXPPTTPPXHPXXKS 666
PP P PP + PP +A P + P +PP P S
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPS 192
Score = 25.8 bits (54), Expect = 8.8
Identities = 12/42 (28%), Positives = 14/42 (33%)
Frame = +1
Query: 529 PXXXPPXEPAXPPAXPRAXQPXXPPXPXGRFXXPPTTPPXHP 654
P P P+ PP P + P P PP P P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAP 180
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.1 bits (62), Expect = 0.95
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = +1
Query: 520 PPXPXXXPPXEPAXPPAXPRAXQPXXPPXPXGRFXXPPTTPP 645
P P PP P A P+ P PP P PP+ PP
Sbjct: 1683 PAHPVSTPPVRPQSA-APPQMSAPTPPPPPMS-VPPPPSAPP 1722
Score = 26.2 bits (55), Expect = 6.7
Identities = 14/42 (33%), Positives = 15/42 (35%)
Frame = +1
Query: 520 PPXPXXXPPXEPAXPPAXPRAXQPXXPPXPXGRFXXPPTTPP 645
PP P P P+ PP A P PP P P P
Sbjct: 1707 PPPPPMSVPPPPSAPPMP--AGPPSAPPPPLPASSAPSVPNP 1746
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 0.95
Identities = 20/72 (27%), Positives = 22/72 (30%)
Frame = +3
Query: 387 PPTPGXRGSXXXXLFXFLAPPXGGGXXXXCRXPAXPHPXAXXXLSPXPRRXPPXXTRXPX 566
PP P G+ APP P P P A P P PP
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGI---PPVPKPAAGVPPVPPPSEAPPVPKPSVG 1206
Query: 567 RPPQGPXTXXPP 602
PP P + PP
Sbjct: 1207 VPPVPPPSTAPP 1218
Score = 27.1 bits (57), Expect = 3.8
Identities = 18/73 (24%), Positives = 21/73 (28%)
Frame = +1
Query: 427 SSXSSRPRXGGXGXXXAXIRPXPTHXRXXRYPPXPXXXPPXEPAXPPAXPRAXQPXXPPX 606
S+ S+P A + P P P P P P A P PP
Sbjct: 993 SAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPV 1052
Query: 607 PXGRFXXPPTTPP 645
P P PP
Sbjct: 1053 PKSSSGAPSAPPP 1065
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = +1
Query: 529 PXXXPPXEPAXPPAXPRAXQPXXPPXPXGRFXXPPTTPP 645
P P PA P P PP P R P+ PP
Sbjct: 721 PAIKPQVTPAPPTPAPTPAVKHHPPPPPVRSSISPSMPP 759
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = -2
Query: 603 GGXXRLXGPGXGGXGXGFXRGGXXGGRG 520
GG R G GG G RGG GGRG
Sbjct: 446 GGGSRGGRGGFGGRGGFGGRGGFGGGRG 473
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/54 (27%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Frame = +1
Query: 487 PXPTHXRXXRY-PPXPXXXPPXEPAXPPAXPRAXQPXXPPXPXGRFXXPPTTPP 645
P P H + + PP P P E PP PP P PP
Sbjct: 209 PPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 262
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/54 (27%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Frame = +1
Query: 487 PXPTHXRXXRY-PPXPXXXPPXEPAXPPAXPRAXQPXXPPXPXGRFXXPPTTPP 645
P P H + PP P P E PP PP P PP
Sbjct: 222 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 275
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/54 (27%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Frame = +1
Query: 487 PXPTHXRXXRY-PPXPXXXPPXEPAXPPAXPRAXQPXXPPXPXGRFXXPPTTPP 645
P P H + PP P P E PP PP P PP
Sbjct: 235 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 288
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/54 (27%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Frame = +1
Query: 487 PXPTHXRXXRY-PPXPXXXPPXEPAXPPAXPRAXQPXXPPXPXGRFXXPPTTPP 645
P P H + PP P P E PP PP P PP
Sbjct: 248 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 301
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/54 (27%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Frame = +1
Query: 487 PXPTHXRXXRY-PPXPXXXPPXEPAXPPAXPRAXQPXXPPXPXGRFXXPPTTPP 645
P P H + PP P P E PP PP P PP
Sbjct: 261 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 314
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/54 (27%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Frame = +1
Query: 487 PXPTHXRXXRY-PPXPXXXPPXEPAXPPAXPRAXQPXXPPXPXGRFXXPPTTPP 645
P P H + PP P P E PP PP P PP
Sbjct: 274 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 327
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/54 (27%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Frame = +1
Query: 487 PXPTHXRXXRY-PPXPXXXPPXEPAXPPAXPRAXQPXXPPXPXGRFXXPPTTPP 645
P P H + PP P P E PP PP P PP
Sbjct: 287 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 340
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/56 (26%), Positives = 16/56 (28%), Gaps = 1/56 (1%)
Frame = +1
Query: 487 PXPTHXRXXRY-PPXPXXXPPXEPAXPPAXPRAXQPXXPPXPXGRFXXPPTTPPXH 651
P P H + PP P P E PP PP P P H
Sbjct: 300 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPFKHHELEEHEGPEH 355
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +1
Query: 541 PPXEPAXPPAXPRAXQPXXPPXP 609
PP P PP P P PP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPP 27
Score = 23.4 bits (48), Expect(2) = 4.4
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 855 PXPPPPPP 878
P PPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 21.4 bits (43), Expect(2) = 4.4
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = +3
Query: 861 PPPPPPXH 884
PPPPPP +
Sbjct: 25 PPPPPPGY 32
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,553,541
Number of Sequences: 5004
Number of extensions: 16669
Number of successful extensions: 203
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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