Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_C11
(1067 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 40 6e-04
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 40 8e-04
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 38 0.002
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 36 0.010
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 35 0.022
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.069
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 33 0.091
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.12
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 31 0.21
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 30 0.48
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.64
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 29 1.5
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 1.9
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 1.9
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 3.4
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 23 4.5
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 23 7.4
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 39.9 bits (89), Expect = 6e-04
Identities = 18/47 (38%), Positives = 19/47 (40%)
Frame = +3
Query: 912 PPXXPRGXXAGXXXGPPPXPPPGXRXXPRXAPPPXXPPPXPPPPRXP 1052
PP P+ P P PPP P APP PP PPP P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 29.1 bits (62), Expect = 1.1
Identities = 19/64 (29%), Positives = 19/64 (29%)
Frame = +3
Query: 870 PXXXXPPXPXXXRPPPXXPRGXXAGXXXGPPPXPPPGXRXXPRXAPPPXXPPPXPPPPRX 1049
P P P PP PPP P P APPP P P P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP--PLPASSAPSV 1743
Query: 1050 PXAG 1061
P G
Sbjct: 1744 PNPG 1747
Score = 27.9 bits (59), Expect = 2.6
Identities = 19/50 (38%), Positives = 19/50 (38%)
Frame = +3
Query: 825 PARGGRAAPXXXRXAPXXXXPPXPXXXRPPPXXPRGXXAGXXXGPPPXPP 974
P R AAP AP PP P PPP AG PPP P
Sbjct: 1691 PVRPQSAAPPQMS-APT---PPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +3
Query: 960 PPXPPPGXRXXPRXAPPPXXPPPXPPPP 1043
P P P+ A PP P PPPP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPP 1710
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 39.5 bits (88), Expect = 8e-04
Identities = 17/37 (45%), Positives = 17/37 (45%)
Frame = +3
Query: 867 APXXXXPPXPXXXRPPPXXPRGXXAGXXXGPPPXPPP 977
AP PP P PPP P AG PPP PPP
Sbjct: 747 APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 38.3 bits (85), Expect = 0.002
Identities = 22/57 (38%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Frame = +3
Query: 909 PPPXXPRGXXAGXXXGPPPXPPPG-XRXXPRXAPPP-----XXPPPXPPPPRXPXAG 1061
PPP P P P PPP P PPP PPP PPPP AG
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788
Score = 33.1 bits (72), Expect = 0.069
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = -3
Query: 684 PPPPPXPXXXGXGGXXGXXXXXXPXXXXPPXPPPPPXXGGXG 559
PPPPP P PP PPPPP G G
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAG 774
Score = 30.7 bits (66), Expect = 0.37
Identities = 17/45 (37%), Positives = 17/45 (37%)
Frame = -3
Query: 693 GXXPPPPPXPXXXGXGGXXGXXXXXXPXXXXPPXPPPPPXXGGXG 559
G PPPPP P G G PP PPPPP G
Sbjct: 759 GGPPPPPPPPGVAGAG--------------PPPPPPPPPAVSAGG 789
Score = 29.9 bits (64), Expect = 0.64
Identities = 21/57 (36%), Positives = 21/57 (36%)
Frame = +3
Query: 870 PXXXXPPXPXXXRPPPXXPRGXXAGXXXGPPPXPPPGXRXXPRXAPPPXXPPPXPPP 1040
P P P P P G PP PPPG A PP PPP PPP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPP---PPPPPPGV----AGAGPP--PPPPPPP 783
Score = 27.9 bits (59), Expect = 2.6
Identities = 19/53 (35%), Positives = 19/53 (35%)
Frame = +1
Query: 559 PPPPPXGGGGXXGGXXXXRXXXPPXPXXPPPPXXXXXGGGGGXXXPPXAXXXP 717
PPPPP G G PP P PPPP GG P A P
Sbjct: 763 PPPPPPGVAG----------AGPPPP--PPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 26.6 bits (56), Expect = 5.9
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = -1
Query: 698 GGXXXPPPPPXXXXXGGGGXXGXGGXXXRXXXXPPXXPPPPXGGGGG 558
GG PPPPP G G G PP PPPP GG
Sbjct: 759 GGPPPPPPPP--------GVAGAG--------PPPPPPPPPAVSAGG 789
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 37.9 bits (84), Expect = 0.002
Identities = 20/55 (36%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Frame = +3
Query: 885 PPXPXXXRPPPXXPRGXXAGXXXGPPPXPPP-GXRXXPRXAPPPXXPPPXPPPPR 1046
PP P R P G + PPP PPP PP P PPPPR
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPR 367
Score = 35.1 bits (77), Expect = 0.017
Identities = 23/79 (29%), Positives = 24/79 (30%), Gaps = 7/79 (8%)
Frame = +3
Query: 828 ARGGRAAPXXXRXAPXXXXPPXPXXXRPPPXXPRGXXAGXXXGP-------PPXPPPGXR 986
+R P AP PP PP P A P PP PPP R
Sbjct: 239 SRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSR 298
Query: 987 XXPRXAPPPXXPPPXPPPP 1043
PP PPPP
Sbjct: 299 VSAAALAANKKRPPPPPPP 317
Score = 33.9 bits (74), Expect = 0.039
Identities = 24/65 (36%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Frame = +3
Query: 885 PPXPXXXRPPPXXPRGXXAGXXXGPPPXPPPGXRXXPRXAPP------PXXPPPXPPPPR 1046
PP P P A PPP PPP R R PP PP PPPPR
Sbjct: 290 PPLPP---PSSRVSAAALAANKKRPPPPPPPSRRN--RGKPPIGNGSSNSSLPPPPPPPR 344
Query: 1047 XPXAG 1061
AG
Sbjct: 345 SNAAG 349
Score = 33.1 bits (72), Expect = 0.069
Identities = 21/56 (37%), Positives = 21/56 (37%), Gaps = 12/56 (21%)
Frame = +3
Query: 909 PPPXXPRGXXAGXXXGP------PPXPPPGXRXXPRXAPPPXXP------PPXPPP 1040
PPP PR AG P PP PPP PPP PP PPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393
Score = 33.1 bits (72), Expect = 0.069
Identities = 26/87 (29%), Positives = 28/87 (32%), Gaps = 9/87 (10%)
Frame = +3
Query: 825 PARGGRAAPXXX-------RXAPXXXXPPXPXXXRPPPXXPRGXXAGXXXGP--PPXPPP 977
PA GR+AP P PP PP P + P PP PP
Sbjct: 393 PAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPS 452
Query: 978 GXRXXPRXAPPPXXPPPXPPPPRXPXA 1058
P A P PP P P P A
Sbjct: 453 APIAPPLPAGMPAAPPLPPAAPAPPPA 479
Score = 31.5 bits (68), Expect = 0.21
Identities = 24/81 (29%), Positives = 25/81 (30%), Gaps = 6/81 (7%)
Frame = +3
Query: 828 ARGGRAAPXXXRXAPXXXXPPXPXXXRPPPXXPRGXXAGXXXGPPPXPPPGXRXXPRXAP 1007
A G P R AP PP P P + PP PPP A
Sbjct: 347 AAGSIPLPPQGRSAPP---PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPAL 403
Query: 1008 PP------XXPPPXPPPPRXP 1052
PP PP P PP P
Sbjct: 404 PPLGNASRTSTPPVPTPPSLP 424
Score = 31.1 bits (67), Expect = 0.28
Identities = 22/64 (34%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Frame = +3
Query: 870 PXXXXPPXPXXXRP--PPXXPRGXXAGXXXGPP-PXPPPGXRXXPRXAPPPXXPPPXPPP 1040
P P P P PP P G A P P PP P APP P PPP
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPA-APPLPPAAPAPPP 478
Query: 1041 PRXP 1052
P
Sbjct: 479 APAP 482
Score = 29.1 bits (62), Expect = 1.1
Identities = 23/84 (27%), Positives = 26/84 (30%), Gaps = 6/84 (7%)
Frame = +3
Query: 825 PARGGRAAPXXX-RXAPXXXXPPXPXXXRPPPXXPRGXXAGXXXGPPPXPPPGXRXXPRX 1001
P+ G + P R PP R P P A PP PP
Sbjct: 370 PSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPP 429
Query: 1002 APPPXXPPPXP-----PPPRXPXA 1058
+ PP PP P PP P A
Sbjct: 430 SLPPSAPPSLPMGAPAAPPLPPSA 453
Score = 29.1 bits (62), Expect = 1.1
Identities = 21/66 (31%), Positives = 22/66 (33%)
Frame = +3
Query: 825 PARGGRAAPXXXRXAPXXXXPPXPXXXRPPPXXPRGXXAGXXXGPPPXPPPGXRXXPRXA 1004
P+ A P AP PP P P P G A PP PP P A
Sbjct: 429 PSLPPSAPPSLPMGAPAA--PPLPPSAPIAPPLPAGMPAA-----PPLPPAAPAPPPAPA 481
Query: 1005 PPPXXP 1022
P P P
Sbjct: 482 PAPAAP 487
Score = 27.9 bits (59), Expect = 2.6
Identities = 18/56 (32%), Positives = 20/56 (35%)
Frame = +3
Query: 885 PPXPXXXRPPPXXPRGXXAGXXXGPPPXPPPGXRXXPRXAPPPXXPPPXPPPPRXP 1052
PP RPP P + PPP PPP +PP P P P P
Sbjct: 233 PPSIPSSRPPERVP----SLSAPAPPPIPPPSNGTVS--SPPNSPPRPIAPVSMNP 282
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = -3
Query: 684 PPPPPXPXXXGXGGXXGXXXXXXPXXXXPPXPPPP 580
PPPPP P G PP PPPP
Sbjct: 311 PPPPPPPSRRNRG--KPPIGNGSSNSSLPPPPPPP 343
Score = 26.6 bits (56), Expect = 5.9
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = -3
Query: 684 PPPPPXPXXXGXGGXXGXXXXXXPXXXXPPXPPPP 580
PPPPP P G P P PPPP
Sbjct: 337 PPPPPPPRSNAAGS-----IPLPPQGRSAPPPPPP 366
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = -1
Query: 683 PPPPPXXXXXGGGGXXGXGGXXXRXXXXPPXXPPPPXGGGGG 558
PPPPP G G G PP PPPP G
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSS--NSSLPPP--PPPPRSNAAG 349
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 35.9 bits (79), Expect = 0.010
Identities = 22/64 (34%), Positives = 23/64 (35%)
Frame = +3
Query: 870 PXXXXPPXPXXXRPPPXXPRGXXAGXXXGPPPXPPPGXRXXPRXAPPPXXPPPXPPPPRX 1049
P PP P P P+ AG PPP P P PP PP PP
Sbjct: 1164 PSVAAPPVPAPSSGIPPVPK-PAAGVPPVPPPSEAPPV-PKPSVGVPPVPPPSTAPPVPT 1221
Query: 1050 PXAG 1061
P AG
Sbjct: 1222 PSAG 1225
Score = 34.3 bits (75), Expect = 0.030
Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Frame = +3
Query: 885 PPXPXXXRPPPXXPRGXXAGXXXGPPPXPPPGXR----XXPRXAPPPXXPPPXPPPPRXP 1052
PP P PP P+ +G PPP P P P APP P PP P+
Sbjct: 1041 PPVPIPTSTPP-VPKS-SSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPS 1098
Query: 1053 XA 1058
A
Sbjct: 1099 VA 1100
Score = 33.1 bits (72), Expect = 0.069
Identities = 20/61 (32%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Frame = +3
Query: 870 PXXXXPPXPXXXRPPPXXPRGXXAGXXXGP----PPXPPPGXRXXPRXAPPPXXPPPXPP 1037
P PP P PP A P PP P P P PPP PP P
Sbjct: 1145 PSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP--VPPPSEAPPVPK 1202
Query: 1038 P 1040
P
Sbjct: 1203 P 1203
Score = 30.7 bits (66), Expect = 0.37
Identities = 19/64 (29%), Positives = 19/64 (29%), Gaps = 3/64 (4%)
Frame = +3
Query: 870 PXXXXPPXPXXXRPPPXXPRGXXAGXXXGP---PPXPPPGXRXXPRXAPPPXXPPPXPPP 1040
P PP P PP A P PP P P P AP PP P
Sbjct: 1126 PSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPA 1185
Query: 1041 PRXP 1052
P
Sbjct: 1186 AGVP 1189
Score = 29.5 bits (63), Expect = 0.84
Identities = 21/67 (31%), Positives = 21/67 (31%), Gaps = 8/67 (11%)
Frame = +3
Query: 885 PPXPXXXRPPPXXPRGXXAGXXXGP----PPXPPPGXRXXPRXAP----PPXXPPPXPPP 1040
PP P P P A P PP P P P P PP PP PP
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Query: 1041 PRXPXAG 1061
P G
Sbjct: 1200 VPKPSVG 1206
Score = 29.1 bits (62), Expect = 1.1
Identities = 24/80 (30%), Positives = 26/80 (32%), Gaps = 7/80 (8%)
Frame = +3
Query: 843 AAPXXXRXAPXXXXPPXPXXXRPPPXXPRGXXAGXXX---GPPPXPPPGXRXXP----RX 1001
AAP + P PP P PP A G PP P P P
Sbjct: 1100 AAPPVPK--PSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSG 1157
Query: 1002 APPPXXPPPXPPPPRXPXAG 1061
APP P PP P +G
Sbjct: 1158 APPVPKPSVAAPPVPAPSSG 1177
Score = 28.3 bits (60), Expect = 1.9
Identities = 18/56 (32%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Frame = +3
Query: 885 PPXPXXXRPPPXXPRGXXA----GXXXGPPPXPPPGXRXXPRXAPPPXXPPPXPPP 1040
PP P P P+ A G PP P P P P P PP P P
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPP--VPVPSGAPPVPKP 1145
Score = 27.9 bits (59), Expect = 2.6
Identities = 17/64 (26%), Positives = 17/64 (26%), Gaps = 3/64 (4%)
Frame = +3
Query: 870 PXXXXPPXPXXXRPPPXXPRGXXAGXXXGP---PPXPPPGXRXXPRXAPPPXXPPPXPPP 1040
P PP P PP P PP P P P P PP P
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243
Query: 1041 PRXP 1052
P
Sbjct: 1244 SEAP 1247
Score = 26.2 bits (55), Expect = 7.9
Identities = 22/76 (28%), Positives = 23/76 (30%), Gaps = 3/76 (3%)
Frame = +3
Query: 834 GGRAAPXXXRXAPXXXXPPXPXXXRPPPXX-PRGXXA--GXXXGPPPXPPPGXRXXPRXA 1004
G +AP AP P P PP P G PP P P P A
Sbjct: 1058 GAPSAPPPV-PAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPA 1116
Query: 1005 PPPXXPPPXPPPPRXP 1052
P P P P P
Sbjct: 1117 PSGAPPVPKPSVAAPP 1132
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 34.7 bits (76), Expect = 0.022
Identities = 22/59 (37%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Frame = -2
Query: 1036 GGXGGGXXGGGAXRGXXRXPGGGXGG--GPXXXPAXXPRGXXGGGRXXXGXGGXXXXGA 866
GG GG G G G GGG GG G A RG GG R G GA
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGA 67
Score = 33.1 bits (72), Expect = 0.069
Identities = 24/50 (48%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -2
Query: 1051 GXRGG-GGXGGGXXGGGAXRGXXRXPGGGXGGGPXXXPAXXPRGXXGGGR 905
G RGG GG GG GGG RG R GG GG A RG GGR
Sbjct: 23 GGRGGFGGGRGGARGGG--RGGARGGRGGRGG------ARGGRGGSSGGR 64
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 33.1 bits (72), Expect = 0.069
Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -2
Query: 1051 GXRGG-GGXGGGXXGGGAXRGXXRXPGGGXGGGP 953
G GG GG GGG G G G GG GGGP
Sbjct: 232 GFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGP 265
Score = 29.5 bits (63), Expect = 0.84
Identities = 22/56 (39%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Frame = -2
Query: 1051 GXRGGGGXGGGXXG-GGAXRGXXRXPGGGXGGGPXXXPAXXPRGXXGGGRXXXGXG 887
G G G GG G GG G P GG GGGP G GGG G G
Sbjct: 212 GFGGEGHHHGGHGGFGGGPGGFEGGP-GGFGGGPGGFGGGL--GGFGGGPGGFGGG 264
Score = 29.1 bits (62), Expect = 1.1
Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = -2
Query: 1042 GGGGXGGGXXG-GGAXRGXXRXPGGGXGGG 956
G GG GGG G GG G PGG G G
Sbjct: 243 GPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272
Score = 28.7 bits (61), Expect = 1.5
Identities = 19/52 (36%), Positives = 19/52 (36%)
Frame = -2
Query: 1042 GGGGXGGGXXGGGAXRGXXRXPGGGXGGGPXXXPAXXPRGXXGGGRXXXGXG 887
G GG GGG G G GG GGG P G GG G G
Sbjct: 222 GHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGF-GGGPGGFGGGPGGHGGPG 272
Score = 26.2 bits (55), Expect = 7.9
Identities = 18/56 (32%), Positives = 18/56 (32%)
Frame = -2
Query: 1051 GXRGGGGXGGGXXGGGAXRGXXRXPGGGXGGGPXXXPAXXPRGXXGGGRXXXGXGG 884
G GGG G G GG G G G GG G G G GG
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG 239
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 32.7 bits (71), Expect = 0.091
Identities = 21/57 (36%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = -2
Query: 1051 GXRGGGGXGGGXXG-GGAXRGXXRXPGGGXGGGPXXXPAXXPRGXXGGGRXXXGXGG 884
G G GG GG G GG+ G GG GGG RG GG GG
Sbjct: 133 GPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 32.3 bits (70), Expect = 0.12
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +3
Query: 957 PPPXPPPGXRXXPRXAPPPXXPPPXPP 1037
PPP PPP P PP PPP PP
Sbjct: 9 PPPPPPP-----PGFEPPSQPPPPPPP 30
Score = 30.7 bits (66), Expect = 0.37
Identities = 16/38 (42%), Positives = 16/38 (42%)
Frame = +3
Query: 939 AGXXXGPPPXPPPGXRXXPRXAPPPXXPPPXPPPPRXP 1052
A G PP PPP PP PP PPPP P
Sbjct: 2 ASLPPGNPPPPPP---------PPGFEPPSQPPPPPPP 30
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +3
Query: 894 PXXXRPPPXXPRGXXAGXXXGPPPXPPPG 980
P PPP P G PPP PPPG
Sbjct: 5 PPGNPPPPPPPPGFEPPSQ--PPPPPPPG 31
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 908 PPPPPPXGXXGGXXXXXPPXPXPXG 982
PPPPPP G PP P P G
Sbjct: 10 PPPPPPPGF---EPPSQPPPPPPPG 31
Score = 23.0 bits (47), Expect(2) = 4.0
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = -3
Query: 615 PXXXXPPXPPPPPXXG 568
P P PPPPP G
Sbjct: 16 PGFEPPSQPPPPPPPG 31
Score = 22.2 bits (45), Expect(2) = 4.0
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -3
Query: 693 GXXPPPPPXP 664
G PPPPP P
Sbjct: 7 GNPPPPPPPP 16
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 31.5 bits (68), Expect = 0.21
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 957 PPPXPPPGXRXXPRXAPPPXXPPPXPPPP 1043
PP PP P PPP PPPP
Sbjct: 168 PPSFQPPSAAAPATSLPSDYNPPPPPPPP 196
Score = 29.1 bits (62), Expect = 1.1
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +3
Query: 957 PPPXPPPGXRXXPRXAPPPXXPPPXPPPP 1043
PPP P P + P PP PPPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPP 195
Score = 28.7 bits (61), Expect = 1.5
Identities = 18/68 (26%), Positives = 20/68 (29%)
Frame = +3
Query: 849 PXXXRXAPXXXXPPXPXXXRPPPXXPRGXXAGXXXGPPPXPPPGXRXXPRXAPPPXXPPP 1028
P P PP P + P PP P+ A P PPP
Sbjct: 184 PSDYNPPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPT---YTPKQADPLPAPPP 240
Query: 1029 XPPPPRXP 1052
PPP P
Sbjct: 241 PPPPTLPP 248
Score = 27.1 bits (57), Expect = 4.5
Identities = 16/51 (31%), Positives = 17/51 (33%)
Frame = +3
Query: 825 PARGGRAAPXXXRXAPXXXXPPXPXXXRPPPXXPRGXXAGXXXGPPPXPPP 977
P+ G AP AP P P P P PPP PPP
Sbjct: 148 PSASGVNAPTVS--APNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPPPPP 196
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 30.3 bits (65), Expect = 0.48
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -2
Query: 1042 GGGGXGGGXXGGGAXRGXXRXPGGGXGGG 956
GG GGG GGG G G G GGG
Sbjct: 438 GGSFPGGGFPGGGFPGGSYNSQGFGMGGG 466
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 29.9 bits (64), Expect = 0.64
Identities = 20/65 (30%), Positives = 22/65 (33%), Gaps = 7/65 (10%)
Frame = +3
Query: 870 PXXXXPPXPXXXRPPPXXPRGXXAGXXXGPPPXPPPGXRXXPRXAPP-----PXXPPPXP 1034
P PP P P P + P PPP P +PP P PP P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198
Query: 1035 P--PP 1043
P PP
Sbjct: 199 PKVPP 203
Score = 28.3 bits (60), Expect = 1.9
Identities = 25/68 (36%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Frame = +3
Query: 870 PXXXXPPXPXX-XRPPPXXPRGXXAGXXXGPPPXPPPGXRXXPRXAPP-PXXPPPXP--- 1034
P PP P RPP P P PPP P APP P PP P
Sbjct: 125 PSAPAPPTPQSELRPPTSAP---------PRPSIPPPS----PASAPPIPSKAPPIPSSL 171
Query: 1035 PPPRXPXA 1058
PPP P A
Sbjct: 172 PPPAQPAA 179
Score = 28.3 bits (60), Expect = 1.9
Identities = 19/70 (27%), Positives = 21/70 (30%), Gaps = 6/70 (8%)
Frame = +3
Query: 867 APXXXXPPXPXXXRPPPXXPRGXXAGXXXGPPPXP------PPGXRXXPRXAPPPXXPPP 1028
AP P P PP + PP P PP P PP P
Sbjct: 143 APPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVP 202
Query: 1029 XPPPPRXPXA 1058
PP + P A
Sbjct: 203 PPPLSQAPVA 212
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 28.7 bits (61), Expect = 1.5
Identities = 17/56 (30%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Frame = +3
Query: 888 PXPXXXRPPPXXPRGXXAGXXXGPPPXPPPGXRXXPRXAPPPXXP-PPXPPPPRXP 1052
P P PP P PPP P P P P P P PP P
Sbjct: 132 PFPHSHHPPLHNPLPVSCQPVLRPPPVPQVPSHWYPVSLPSPNLPHQPISKPPVIP 187
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 1008 PPXXPPPXPPPPRXPXAG 1061
P PPP PPPP AG
Sbjct: 942 PAFPPPPPPPPPLVSAAG 959
Score = 24.6 bits (51), Expect(2) = 1.9
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = -3
Query: 600 PPXPPPPPXXGGXG 559
PP PPPPP G
Sbjct: 946 PPPPPPPPLVSAAG 959
Score = 21.8 bits (44), Expect(2) = 1.9
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = -3
Query: 615 PXXXXPPXPPPP 580
P PP PPPP
Sbjct: 942 PAFPPPPPPPPP 953
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 500
Score = 28.3 bits (60), Expect = 1.9
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = -2
Query: 1051 GXRGGGGXGGGXXGGGAXRGXXRXPGGGXGGGPXXXP 941
G RGG G GG G G G G G GG P
Sbjct: 448 GSRGGRGGFGGRGGFGGRGGFGGGRGRGRGGARSGNP 484
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.5 bits (58), Expect = 3.4
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +3
Query: 960 PPXPPPGXRXXPRXAPPPXXPPPXPPPPRXPXAG 1061
PP PPP P+ A PP P PP P AG
Sbjct: 1882 PPPPPP--MALPK-AGPPSAAPTSALPPAGPPAG 1912
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 23.4 bits (48), Expect(2) = 4.5
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 1020 PPPXPPPP 1043
PPP PPPP
Sbjct: 307 PPPPPPPP 314
Score = 21.8 bits (44), Expect(2) = 4.5
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +3
Query: 930 GXXAGXXXGPPPXPPP 977
G A PPP PPP
Sbjct: 298 GDSANGGLPPPPPPPP 313
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 23.4 bits (48), Expect(2) = 7.4
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 1020 PPPXPPPP 1043
PPP PPPP
Sbjct: 370 PPPPPPPP 377
Score = 21.0 bits (42), Expect(2) = 7.4
Identities = 7/17 (41%), Positives = 8/17 (47%)
Frame = +3
Query: 927 RGXXAGXXXGPPPXPPP 977
R + PPP PPP
Sbjct: 360 RSRWSNISYSPPPPPPP 376
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.155 0.546
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,054,103
Number of Sequences: 5004
Number of extensions: 32981
Number of successful extensions: 490
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 563206452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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