Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_C09
         (1022 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   0.23 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.46 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.60 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   3.2  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   3.9  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   5.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   5.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.6  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   9.8  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.5 bits (58), Expect(2) = 0.23
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +3

Query: 729 PLXPXXXXPXVXXTXPPPXXXPPPPPPXXPP 821
           P  P    P      P P   PPPPPP  PP
Sbjct: 221 PEIPPTYTPKQADPLPAP---PPPPPPTLPP 248



 Score = 25.8 bits (54), Expect = 9.8
 Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
 Frame = +3

Query: 753 PXVXXTXPPPXXXP-PPPPPXXPPXPPSXHLXSXSXXTPXR 872
           P +  T  P    P P PPP  PP  P     +     P R
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLPMPSR 261



 Score = 22.2 bits (45), Expect(2) = 0.23
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 798 PPPPXXPPXPP 830
           PPPP  P  PP
Sbjct: 273 PPPPATPSQPP 283


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.46
 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
 Frame = +3

Query: 774 PPPXXXPP--PPPPXXPPXPPSXHLXSXSXXTP 866
           PPP   PP   PP   PP PP  ++      TP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41



 Score = 26.2 bits (55), Expect = 7.4
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 780 PXXXPPPPPPXXPPXPPS 833
           P   PPPPPP     PPS
Sbjct: 5   PPGNPPPPPPPPGFEPPS 22


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.9 bits (64), Expect = 0.60
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +3

Query: 753  PXVXXTXPPPXXXPPPPPPXXPPXP 827
            P +    PPP     PPPP  PP P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMP 1724



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
 Frame = +3

Query: 714  FXXYXPLXPXXXXPXVXXTXPPPXXXP--PPPPPXXPPXPPS 833
            F    P  P    P    +  PP      PPPPP   P PPS
Sbjct: 1678 FGGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPS 1719



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = +3

Query: 774  PPPXXXPPPP-PPXXPPXPPS 833
            PPP   PPPP  P  P  PPS
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPS 1729



 Score = 27.5 bits (58), Expect = 3.2
 Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
 Frame = +3

Query: 753  PXVXXTXPPPXXXPPPP--PPXXPPXP 827
            P    + PPP   PP P  PP  PP P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 305

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 17/51 (33%), Positives = 18/51 (35%)
 Frame = -1

Query: 1013 GXGLAXXERXGXGXXXAXRXXXGRGXERXGCXGRGGXGRGXXXXXGDTXGS 861
            G G     R G G         GRG  R G  GRGG   G     G   G+
Sbjct: 17   GRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGA 67


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.0 bits (47), Expect(2) = 3.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 792 PPPPPPXXP 818
           PPPPPP  P
Sbjct: 945 PPPPPPPPP 953



 Score = 22.2 bits (45), Expect(2) = 3.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 777 PPXXXPPPPPP 809
           P    PPPPPP
Sbjct: 942 PAFPPPPPPPP 952


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 17/57 (29%), Positives = 17/57 (29%)
 Frame = +3

Query: 729 PLXPXXXXPXVXXTXPPPXXXPPPPPPXXPPXPPSXHLXSXSXXTPXRIPXXXXXSP 899
           P  P         T  PP    PPP P   P  PS      S   P   P     SP
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
 Frame = +3

Query: 768 TXPPPXXXPPPPPPXXPP-XPPS 833
           T  PP   PP  PP  PP  PPS
Sbjct: 412 TSTPPVPTPPSLPPSAPPSLPPS 434



 Score = 25.8 bits (54), Expect = 9.8
 Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
 Frame = +3

Query: 774 PPPXXXPPPPPPXXPP-XPPS 833
           P P   PP  PP  PP  PPS
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPS 438


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 14/37 (37%), Positives = 14/37 (37%), Gaps = 6/37 (16%)
 Frame = +3

Query: 738 PXXXXPXVXXTXPPPXXXPPPPP------PXXPPXPP 830
           P    P V    P P   P PPP      P  PP PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 25.8 bits (54), Expect = 9.8
 Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
 Frame = +3

Query: 738 PXXXXPXVXXTXPPPXXXPPP-----PPPXXPPXPPS 833
           P    P       PP   PPP      PP  PP PP+
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
 Frame = -2

Query: 829 GGXGGXXGGGGGGXX-XGGGXVXXTXGXXXMGXXG 728
           GG GG  GG GGG    GGG      G    G  G
Sbjct: 238 GGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,249,588
Number of Sequences: 5004
Number of extensions: 11964
Number of successful extensions: 222
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 533248662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)