Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_C09
         (1022 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.83 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.4  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.83
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 777 PPXXXPPPPPP 809
           PP   PPPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 23.8 bits (49), Expect = 2.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 798 PPPPXXPPXPPS 833
           PP P  PP PPS
Sbjct: 338 PPKPAPPPPPPS 349



 Score = 23.0 bits (47), Expect = 4.4
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 774 PPPXXXPPPPPPXXPP 821
           PP    PPPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 7.8
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +3

Query: 768 TXPPPXXXPPPPPPXXP 818
           T P P   PPPP    P
Sbjct: 337 TPPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 7.8
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = +3

Query: 780 PXXXPPPPPPXXPPXPPSXHL 842
           P    PPPPP     P S  L
Sbjct: 338 PPKPAPPPPPPSSSGPDSAKL 358


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = +3

Query: 753 PXVXXTXPPPXXXPPPPPPXXPPXPPS 833
           P       PP     PPP   P  PPS
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPPS 57



 Score = 22.6 bits (46), Expect = 5.9
 Identities = 10/30 (33%), Positives = 10/30 (33%)
 Frame = +3

Query: 729 PLXPXXXXPXVXXTXPPPXXXPPPPPPXXP 818
           P  P    P      PPP   P  PP   P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,473
Number of Sequences: 438
Number of extensions: 2625
Number of successful extensions: 16
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 34104798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)