Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_C08
(866 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165 30 2.8
02_04_0255 - 21323382-21323966 29 3.6
02_04_0254 - 21314861-21315805 29 3.6
02_04_0252 - 21305834-21306778 29 3.6
02_04_0250 - 21287782-21288726 29 3.6
02_04_0248 - 21278756-21279700 29 3.6
02_04_0246 - 21269730-21270674 29 3.6
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.4
02_01_0119 - 876317-876610,876937-877099,877222-877302,877508-87... 29 6.4
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.4
07_03_0697 + 20759176-20759817,20760592-20760708,20761422-207616... 28 8.4
01_01_1008 - 7987936-7988628,7988923-7989102 28 8.4
>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
Length = 430
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 636 SRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 517
SRGK L+S + R PP + + V+ + GGG G P T
Sbjct: 25 SRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64
>02_04_0255 - 21323382-21323966
Length = 194
Score = 29.5 bits (63), Expect = 3.6
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 816 TACPLIRVTIVLXPPPL 866
+ CPL R+T+V+ PPPL
Sbjct: 146 STCPLCRLTVVVPPPPL 162
>02_04_0254 - 21314861-21315805
Length = 314
Score = 29.5 bits (63), Expect = 3.6
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 816 TACPLIRVTIVLXPPPL 866
+ CPL R+T+V+ PPPL
Sbjct: 159 STCPLCRLTVVVPPPPL 175
>02_04_0252 - 21305834-21306778
Length = 314
Score = 29.5 bits (63), Expect = 3.6
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 816 TACPLIRVTIVLXPPPL 866
+ CPL R+T+V+ PPPL
Sbjct: 159 STCPLCRLTVVVPPPPL 175
>02_04_0250 - 21287782-21288726
Length = 314
Score = 29.5 bits (63), Expect = 3.6
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 816 TACPLIRVTIVLXPPPL 866
+ CPL R+T+V+ PPPL
Sbjct: 159 STCPLCRLTVVVPPPPL 175
>02_04_0248 - 21278756-21279700
Length = 314
Score = 29.5 bits (63), Expect = 3.6
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 816 TACPLIRVTIVLXPPPL 866
+ CPL R+T+V+ PPPL
Sbjct: 159 STCPLCRLTVVVPPPPL 175
>02_04_0246 - 21269730-21270674
Length = 314
Score = 29.5 bits (63), Expect = 3.6
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 816 TACPLIRVTIVLXPPPL 866
+ CPL R+T+V+ PPPL
Sbjct: 159 STCPLCRLTVVVPPPPL 175
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.4
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +1
Query: 352 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 507
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>02_01_0119 -
876317-876610,876937-877099,877222-877302,877508-877570,
878246-878355
Length = 236
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +3
Query: 564 QKSTLKSEVAKPDRTIKIPGVSPWKLPRAL---SCFRPCRLPDTCPPFSLXGSRXA 722
+K TLK+E + ++ +K V+P L + F P P PP+ G++ A
Sbjct: 148 EKVTLKAEKERLEQQVKALSVAPTGFVPHLPHPAAFHPAAFPPFIPPYQALGNKNA 203
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 301 NESAN---ARGEAVCVLGALPLPRSLTRCAR 384
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>07_03_0697 +
20759176-20759817,20760592-20760708,20761422-20761696,
20761906-20762068,20762293-20762421,20762989-20763713,
20763853-20764081
Length = 759
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 526 RFSIGSAPLDEHHKNRRSSQRWRNP 600
RFS SAP+D+H + RR NP
Sbjct: 132 RFSSSSAPVDKHGRRRRKKGGRENP 156
>01_01_1008 - 7987936-7988628,7988923-7989102
Length = 290
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 703 REKGGQVSGKRQGRKQESARGSFQGETPG 617
R GG+V+G+ R + RG+++GE G
Sbjct: 246 RGGGGEVNGEEAARSRRRRRGAWEGEEEG 274
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,501,976
Number of Sequences: 37544
Number of extensions: 483693
Number of successful extensions: 1482
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1481
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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