Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_C08
         (866 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          26   0.52 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      26   0.52 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.8  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 613 RYQAFPPGSSLVRSPVSDPAAYRIPVRLSPFXEAVXLPHSSP 738
           +YQ  P    +  + + DPA YRI  R+  +  +  + H  P
Sbjct: 398 KYQIVPSALEIFSTSMKDPAFYRIYKRIIDYYHSYKM-HQKP 438


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 613 RYQAFPPGSSLVRSPVSDPAAYRIPVRLSPFXEAVXLPHSSP 738
           +YQ  P    +  + + DPA YRI  R+  +  +  + H  P
Sbjct: 398 KYQIVPSALEIFSTSMKDPAFYRIYKRIIDYYHSYKM-HQKP 438


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = -2

Query: 610 IVLSGFATSDLSVDFCDARPGGRSLWKNASNAAFLRFL 497
           ++   +A  D+  + CD +PG     K       L++L
Sbjct: 478 VMAFAYAFRDMHKELCDGKPGLCDAMKPTKGTELLKYL 515


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,212
Number of Sequences: 438
Number of extensions: 5332
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)