Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_C03
(933 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 40 4e-04
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 33 0.044
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.044
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.058
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.10
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.31
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 31 0.31
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.94
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 28 1.6
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.8
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 5.0
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 5.0
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 26 6.6
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 26 6.6
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 26 8.7
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 26 8.7
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 40.3 bits (90), Expect = 4e-04
Identities = 20/48 (41%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Frame = +2
Query: 797 PHPXAXLAXTPPFTPXPXPPXPX---NXPP*PPPPXXXXLIPXGPPPP 931
P P A + TP P P PP PP PPPP P PPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 29.1 bits (62), Expect = 0.94
Identities = 15/46 (32%), Positives = 17/46 (36%)
Frame = +2
Query: 755 PXXIPTSXVXVPSXPHPXAXLAXTPPFTPXPXPPXPXNXPP*PPPP 892
P I + P P A + PP P P PP PPPP
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 29.1 bits (62), Expect = 0.94
Identities = 14/43 (32%), Positives = 16/43 (37%)
Frame = +2
Query: 764 IPTSXVXVPSXPHPXAXLAXTPPFTPXPXPPXPXNXPP*PPPP 892
+PT P P + PP P P PP PPPP
Sbjct: 741 VPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +2
Query: 815 LAXTPPFTPXPXPPXPXNXPP*PPPPXXXXLIPXGPPPP 931
L PP P P P P PPP P PPPP
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 26.2 bits (55), Expect = 6.6
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Frame = +2
Query: 767 PTSXVXVPSX-PHPXAXLAXTPPFTPXPXPPXPXN----XPP*PPPP 892
P V VP+ P P P P PP P PP PPPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 33.5 bits (73), Expect = 0.044
Identities = 17/39 (43%), Positives = 18/39 (46%)
Frame = +2
Query: 815 LAXTPPFTPXPXPPXPXNXPP*PPPPXXXXLIPXGPPPP 931
+A PP P P PP P PP PPP PPPP
Sbjct: 1 MASLPPGNPPPPPPPPGFEPPSQPPP---------PPPP 30
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 33.5 bits (73), Expect = 0.044
Identities = 20/47 (42%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Frame = -1
Query: 927 GGGPXGXXWXXXG-GGGQ---GGXLXGXGGXGXGVXGGVXAXQAXGW 799
GGGP G G GGG GG L G GG G GG GW
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPGW 273
Score = 25.8 bits (54), Expect = 8.7
Identities = 17/48 (35%), Positives = 18/48 (37%)
Frame = -1
Query: 930 GGGGPXGXXWXXXGGGGQGGXLXGXGGXGXGVXGGVXAXQAXGWGXEG 787
G GGP G GG GG GG G G GG + G G
Sbjct: 196 GSGGPPPGPGGFGGFGGFGGEGHHHGGHG-GFGGGPGGFEGGPGGFGG 242
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.1 bits (72), Expect = 0.058
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Frame = +2
Query: 764 IPTSXVXVPSXPHPXAXLAXTPPFTPXPXPPXPXNXPP*PPPPXXXXLIP---XGPPP 928
+P +P P P A + PP + P P P P PPP +P G PP
Sbjct: 1171 VPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228
Score = 32.7 bits (71), Expect = 0.076
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Frame = +2
Query: 764 IPTSXVXVPSXPHPXAXLAXTP-PFTPXPXPPXPXNXPP*PPPPXXXXLIPXGPPP 928
+P V P P P + + P P P P P PP P P +P PPP
Sbjct: 1161 VPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVG---VPPVPPP 1213
Score = 32.3 bits (70), Expect = 0.10
Identities = 18/57 (31%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Frame = +2
Query: 764 IPTSXVXVPSXPHPXAXLAXTPPFTPXPXPPXPXNXPP*PPPPXXXXLI--PXGPPP 928
+P V VP P P P P P P PP P P + P G PP
Sbjct: 1104 VPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPP 1160
Score = 30.3 bits (65), Expect = 0.41
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Frame = +2
Query: 755 PXXIPTSXVXVPSXPHPXAXLAXTPPF-TPXPXPPXPXNXPP*PPPPXXXXLIPXGPPP 928
P +P +PS P P + PP P PP P PP P +P P P
Sbjct: 1063 PPPVPAPSSEIPSIPAP----SGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAP 1117
Score = 29.1 bits (62), Expect = 0.94
Identities = 22/60 (36%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Frame = +2
Query: 755 PXXIPTSXVXVP--SXPHPXAXLAXTPPFTPXPXPPXPXNXPP*PPPPXXXXLIPXGPPP 928
P IPTS VP S P A P + P P P PP P P IP P P
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSG----IPPVPKP 1097
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/58 (29%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Frame = +2
Query: 764 IPTSXVXVPSXPHPXAXLAXTPPFTPXPXPPXPXNXPP*PPPPXXXXLIP---XGPPP 928
+P V P P P P P P P PP P P +P G PP
Sbjct: 1123 VPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/60 (28%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Frame = +2
Query: 764 IPTSXVXVPSXPHPXAXLAXTPPFTPXPXPPXPXNXPP*PPPPXXXXLIP----XGPPPP 931
+P VP P P P P P P PP P P +P PP P
Sbjct: 1181 VPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240
Score = 27.9 bits (59), Expect = 2.2
Identities = 17/55 (30%), Positives = 20/55 (36%)
Frame = +2
Query: 764 IPTSXVXVPSXPHPXAXLAXTPPFTPXPXPPXPXNXPP*PPPPXXXXLIPXGPPP 928
+P V P P P + P P PP P PP P +P G PP
Sbjct: 1094 VPKPSVAAPPVPKPSVAVPPVP--APSGAPPVPKPSVAAPPVP-----VPSGAPP 1141
Score = 27.9 bits (59), Expect = 2.2
Identities = 19/52 (36%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Frame = +2
Query: 779 VXVPSX--PHPXAXLAXTPPFTPXPXPPXPXNXPP*PPPPXXXXLIPXGPPP 928
V VPS P P +A P P PP P PP P IP P P
Sbjct: 1133 VPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKP 1184
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/55 (29%), Positives = 19/55 (34%)
Frame = +2
Query: 764 IPTSXVXVPSXPHPXAXLAXTPPFTPXPXPPXPXNXPP*PPPPXXXXLIPXGPPP 928
+P V P P P P P P P + P P P +P PPP
Sbjct: 1142 VPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIP--PVPKPAAGVPPVPPP 1194
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/47 (31%), Positives = 16/47 (34%)
Frame = +2
Query: 788 PSXPHPXAXLAXTPPFTPXPXPPXPXNXPP*PPPPXXXXLIPXGPPP 928
P P P + PP P PP P PP P P P P
Sbjct: 1198 PPVPKPSVGVPPVPP--PSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 26.6 bits (56), Expect = 5.0
Identities = 16/55 (29%), Positives = 19/55 (34%)
Frame = +2
Query: 764 IPTSXVXVPSXPHPXAXLAXTPPFTPXPXPPXPXNXPP*PPPPXXXXLIPXGPPP 928
+P P P P A P + P P P + PP P P PPP
Sbjct: 1014 VPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSG---APSAPPP 1065
Score = 26.6 bits (56), Expect = 5.0
Identities = 17/56 (30%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Frame = +2
Query: 764 IPTSXVXVPSXPHPXAXLAXTPPFTPXPXPPXPXNXPP-*PPPPXXXXLIPXGPPP 928
+P S PS P P + P P P P P PP P P P P
Sbjct: 1052 VPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKP 1107
Score = 25.8 bits (54), Expect = 8.7
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Frame = +2
Query: 767 PTSXVXVPSXPHPXAXLAXTPPF----TPXPXPPXP-XNXPP*PPPPXXXXL-IPXGPPP 928
P++ + P P A LA PP + P P P + PP P P + IP PP
Sbjct: 992 PSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPP 1051
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 32.3 bits (70), Expect = 0.10
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +2
Query: 791 SXPHPXAXLAXTPPFTPXPXPPXPXNXPP*PPPPXXXXLIPXGPPPP 931
S P A P + PP P + PP P P P PPPP
Sbjct: 1688 STPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 31.5 bits (68), Expect = 0.18
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = +2
Query: 791 SXPHPXAXLAXTPPFTPXPXPPXPXNXPP*PPPPXXXXLIPXGPPP 928
S P P PP P PP P P PPPP P P P
Sbjct: 1703 SAPTPPPPPMSVPP--PPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 30.7 bits (66), Expect = 0.31
Identities = 20/55 (36%), Positives = 21/55 (38%)
Frame = +2
Query: 767 PTSXVXVPSXPHPXAXLAXTPPFTPXPXPPXPXNXPP*PPPPXXXXLIPXGPPPP 931
PTS PS P P A PP P PP P + PP P P P P
Sbjct: 140 PTSAPPRPSIPPPSP--ASAPPI-PSKAPPIPSSLPPPAQPAAPVKSPPSAPSLP 191
Score = 30.3 bits (65), Expect = 0.41
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +2
Query: 788 PSXPHPXAXLAXTPPFTPXPXPPXPXNXPP*PPP-PXXXXLIPXGPPPP 931
P+ P P + L PP + P P P P PP P IP PPP
Sbjct: 128 PAPPTPQSEL--RPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174
Score = 29.5 bits (63), Expect = 0.71
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Frame = +2
Query: 767 PTSXVXVPSXPHPXAXLAXTPPFTPXPXPPXPXNXPP*PP--PPXXXXLIPXGPPP 928
P S + P+ P + PP +P PP P PP P PP P PP
Sbjct: 133 PQSELRPPTSAPPRPSI---PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185
Score = 26.2 bits (55), Expect = 6.6
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Frame = +2
Query: 764 IPTSXVXVPSXPHPXAXLAX---TPPFTPXPXPPXPXNXPP*PPPP 892
IP+ +PS P A A +PP P P P PPPP
Sbjct: 160 IPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 30.7 bits (66), Expect = 0.31
Identities = 18/48 (37%), Positives = 20/48 (41%)
Frame = -1
Query: 930 GGGGPXGXXWXXXGGGGQGGXLXGXGGXGXGVXGGVXAXQAXGWGXEG 787
GG G G GGG+GG G GG G G GG G +G
Sbjct: 23 GGRGGFGGGRGGARGGGRGGARGGRGGRG-GARGGRGGSSGGRGGAKG 69
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 0.94
Identities = 19/58 (32%), Positives = 20/58 (34%)
Frame = +2
Query: 755 PXXIPTSXVXVPSXPHPXAXLAXTPPFTPXPXPPXPXNXPP*PPPPXXXXLIPXGPPP 928
P +P S PS P PP P PP P P PP P P P P
Sbjct: 428 PPSLPPSAP--PSLPMGAPAAPPLPPSAPIA-PPLPAGMPAAPPLPPAAPAPPPAPAP 482
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/51 (31%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Frame = +2
Query: 773 SXVXVPSXPHPXAXLAXTPPFTPXPXPP-XPXNXPP*PPPPXXXXLIPXGP 922
S P P P + PP P PP P P PP P + P P
Sbjct: 410 SRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460
Score = 27.5 bits (58), Expect = 2.9
Identities = 18/56 (32%), Positives = 20/56 (35%)
Frame = +2
Query: 764 IPTSXVXVPSXPHPXAXLAXTPPFTPXPXPPXPXNXPP*PPPPXXXXLIPXGPPPP 931
+PT PS P A PP P P P P P P +P PP P
Sbjct: 417 VPTPPSLPPSAPPSLPPSA--PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP 470
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/53 (30%), Positives = 18/53 (33%)
Frame = +2
Query: 755 PXXIPTSXVXVPSXPHPXAXLAXTPPFTPXPXPPXPXNXPP*PPPPXXXXLIP 913
P +P P P P A +A P PP P P PP P P
Sbjct: 436 PPSLPMGAPAAPPLP-PSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 845 PXPPXPXNXPP*PPPPXXXXLIPXGPPP 928
P PP + PP PPPP PPP
Sbjct: 352 PLPPQGRSAPP-PPPPRSAPSTGRQPPP 378
Score = 26.2 bits (55), Expect = 6.6
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +2
Query: 797 PHPXAXLAXTPPF-TPXPXPP-XPXNXPP*PPPPXXXXLIPXGPPPP 931
P A TPP TP PP P + PP PP P PP P
Sbjct: 405 PLGNASRTSTPPVPTPPSLPPSAPPSLPP-SAPPSLPMGAPAAPPLP 450
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Frame = +2
Query: 818 AXTPPFTPXPXPPXPX---NXPP*PPPPXXXXLIPXGPPPP 931
A P TP P P P P PPPP + P PP P
Sbjct: 722 AIKPQVTPAPPTPAPTPAVKHHP-PPPPVRSSISPSMPPAP 761
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 27.1 bits (57), Expect = 3.8
Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Frame = +2
Query: 788 PSXP--HPXAXLAXTPPFTPXPXP-PXPXNXPP*PPPPXXXXLIPXGPPPP 931
PS P P TP P P N PPPP ++ PPPP
Sbjct: 105 PSQPPKEPALPSRGTPSLPSRPGSRPSVLNQEQVPPPPVRPNVMSQMPPPP 155
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Frame = +2
Query: 773 SXVXVPSXPHPXAXLAXTPPFTPXPXP------PXPXNXPP*PPPP 892
S V P+ P + ++ P F P P N PP PPPP
Sbjct: 151 SGVNAPTVSAPNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPPPPP 196
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 827 PPFTPXPXPPXPXNXPP*PPPP 892
P +TP P P PP PPPP
Sbjct: 225 PTYTPKQADPLPA--PPPPPPP 244
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = -1
Query: 921 GPXGXXWXXXGGGGQGGXLXGXGGXGXGVXGG 826
GP G GG+GG G GG G GG
Sbjct: 133 GPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGG 164
Score = 25.8 bits (54), Expect = 8.7
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = -2
Query: 926 GGARGGXXGXXXGGEVRGDX*XXXGGXXXX*XGGXVRXRXRGG 798
GG+RGG G GG G GG GG R RGG
Sbjct: 148 GGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGG-FRGGSRGG 189
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = -3
Query: 928 GGGPXGDXXGXXXGGRSGGXVXGXXGAGXGXEXGG 824
GG G G GG GG G G G GG
Sbjct: 155 GGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -1
Query: 891 GGGGQGGXLXGXGGXGXGVXGG 826
GGG G L G GG G G GG
Sbjct: 225 GGGLGGAGLGGLGGAGLGGFGG 246
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = -3
Query: 928 GGGPXGDXXGXXXGGRSGGXVXGXXGAGXGXEXGG 824
GGG G G GGR G G G G G GG
Sbjct: 446 GGGSRGGRGGF--GGRGGFGGRGGFGGGRGRGRGG 478
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Frame = +2
Query: 785 VPSXPHPXAXLAXTPPFTPXPXPPXP-XNXPP*PPPP 892
+P+ P P L PP P P P PP P P
Sbjct: 109 LPNEPVPEEPLPGEPPLPDEPVPEEPLPGEPPLPNEP 145
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -1
Query: 891 GGGGQGGXLXGXGGXGXGVXG 829
GG G+GG G GG G G
Sbjct: 570 GGNGRGGRYSGRGGRGGNAYG 590
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,594,701
Number of Sequences: 5004
Number of extensions: 43783
Number of successful extensions: 294
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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