Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_C02
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.068
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   5.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.068
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +3

Query: 588 PPPPPXXGGGGXXPPPP 638
           PPPPP   G G  PPPP
Sbjct: 764 PPPPPGVAGAGPPPPPP 780



 Score = 31.5 bits (68), Expect = 0.16
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +3

Query: 588 PPPPPXXGGGGXXPPPP 638
           PPPPP  G  G  PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPP 778



 Score = 30.7 bits (66), Expect = 0.27
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +3

Query: 588 PPPPPXXGGGGXXPPPPXFXGGXXXP 665
           PPP P  GG    PPPP   G    P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 29.1 bits (62), Expect = 0.83
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 588 PPPPPXXGGGGXXPPPP 638
           PPPPP    G   PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPP 779



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 588 PPPPPXXGGGGXXPPPP 638
           PPPP   G G   PPPP
Sbjct: 765 PPPPGVAGAGPPPPPPP 781



 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 588 PPPPPXXGGGGXXPPPP 638
           P PPP    GG  PPPP
Sbjct: 750 PVPPPAPIMGGPPPPPP 766


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/53 (32%), Positives = 17/53 (32%)
 Frame = -1

Query: 634 GGGXXPPPPXXGGGGGXXXFX*XXXXXXXXXXFFXXPPGXXXKKXIFXXXPXG 476
           GGG   PPP  GG GG   F            F   P G       F   P G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 588 PPPPPXXGGGGXXPPPP 638
           PPPPP     G  P PP
Sbjct: 339 PPPPPRSNAAGSIPLPP 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,752,571
Number of Sequences: 5004
Number of extensions: 21589
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)