Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_C01
         (894 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    26   0.53 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   5.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.6  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +1

Query: 166 QDLEEKLYNSILTGDYDSAVRQSLEYESQGXGSIIQNVVNXLIIDXRRNTMEYCYXL 336
           ++ E+++ ++IL G YD+ +R S E  + G   +  N+    I      TMEY   L
Sbjct: 29  REKEKEVLDNIL-GGYDARIRPSGENATDGPAVVRVNIFVRSISKIDDVTMEYSVQL 84


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +1

Query: 166 QDLEEKLYNSILTGDYDSAVRQSLEYESQGXGSIIQNVVNXLIIDXRRNTMEYCYXL 336
           ++ E+++ ++IL G YD+ +R S E  + G   +  N+    I       MEY   L
Sbjct: 29  REKEKEVLDNIL-GGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQL 84


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 496  DGVDQHTELVSWK 534
            D +DQHT  V+WK
Sbjct: 986  DDLDQHTLKVTWK 998


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
 Frame = -2

Query: 323 YSMVFRLXSMIRXXTTFWMMEPXPWL-----SYSKL*RTALS*SPVRMLLYSFSSRSWLE 159
           Y+M F         T F  ++P PW+         +  +AL    + ML+  F    W  
Sbjct: 213 YNMTFAQNGPFNTTTIFVPVKPCPWICELTNDAGYVVYSALGSFYIPMLVMLFF--YWRI 270

Query: 158 VSADSSTTPALAASMHIANTSEKF 87
            +A  STT A+        +S+ F
Sbjct: 271 YNAAVSTTKAINQGFRTTKSSKMF 294


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
 Frame = +3

Query: 627 PG-PXATXXYXAGTALTTTXXXXGSSXPPRTKTXLXXXPPP 746
           PG P  T      T  TTT     ++ P  T+      PPP
Sbjct: 651 PGAPATTITTITTTTTTTTTTTTTTTTPNTTQNASATTPPP 691


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,920
Number of Sequences: 438
Number of extensions: 3551
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)