Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_B24
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   203   2e-53
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   203   3e-53
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce...    26   6.6  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  203 bits (496), Expect = 2e-53
 Identities = 93/136 (68%), Positives = 109/136 (80%)
 Frame = +1

Query: 85  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 264
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 265 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 444
           FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL IV++G Q+
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQD 120

Query: 445 IPGLTDGNVPRRLGPK 492
           IPGLTD  VP+RLGPK
Sbjct: 121 IPGLTDVTVPKRLGPK 136



 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 22/35 (62%), Positives = 29/35 (82%), Gaps = 1/35 (2%)
 Frame = +2

Query: 488 PKRASQIP*AVHLSKEDDVRRYVVQR-VLPXKEGK 589
           PKRAS+I    +LSKEDDVR++V++R V+P KEGK
Sbjct: 135 PKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK 169


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  203 bits (495), Expect = 3e-53
 Identities = 92/136 (67%), Positives = 109/136 (80%)
 Frame = +1

Query: 85  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 264
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 265 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 444
           FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I+++G Q+
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQD 120

Query: 445 IPGLTDGNVPRRLGPK 492
           IPGLTD  VP+RLGPK
Sbjct: 121 IPGLTDVTVPKRLGPK 136



 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 22/35 (62%), Positives = 29/35 (82%), Gaps = 1/35 (2%)
 Frame = +2

Query: 488 PKRASQIP*AVHLSKEDDVRRYVVQR-VLPXKEGK 589
           PKRAS+I    +LSKEDDVR++V++R V+P KEGK
Sbjct: 135 PKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK 169


>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 445

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -1

Query: 154 ACARPPLRTTSGIPLPGTKRLTS*LRSIPSNVSQ 53
           A   PP  T S IP  GT+ L   +   P NV +
Sbjct: 367 AAVNPPATTVSFIPADGTEPLKLLVNGEPQNVDE 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,559
Number of Sequences: 5004
Number of extensions: 58862
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)