Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_B24
(928 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 183 2e-46
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 180 1e-45
04_04_0909 - 29312875-29313135,29313235-29313556,29313676-293139... 32 0.74
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 29 4.0
02_05_0956 - 33064104-33066425 29 6.9
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 183 bits (445), Expect = 2e-46
Identities = 85/138 (61%), Positives = 105/138 (76%), Gaps = 2/138 (1%)
Frame = +1
Query: 85 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 264
MK N++ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 265 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 438
FPMKQGVLT+ RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG
Sbjct: 61 FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGD 120
Query: 439 QEIPGLTDGNVPRRLGPK 492
++PGLTD PR GPK
Sbjct: 121 NDLPGLTDTEKPRMRGPK 138
Score = 35.1 bits (77), Expect = 0.080
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = +2
Query: 488 PKRASQIP*AVHLSKEDDVRRYV--VQRVLPXKEGKXNAK 601
PKRAS+I +L+K+DDVR+YV +R K GK +K
Sbjct: 137 PKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVSK 176
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 180 bits (439), Expect = 1e-45
Identities = 84/138 (60%), Positives = 104/138 (75%), Gaps = 2/138 (1%)
Frame = +1
Query: 85 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 264
MK N++ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 265 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 438
FPMKQGVLT RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG
Sbjct: 61 FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGE 120
Query: 439 QEIPGLTDGNVPRRLGPK 492
++PGLTD PR GPK
Sbjct: 121 NDLPGLTDTEKPRMRGPK 138
Score = 36.3 bits (80), Expect = 0.035
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = +2
Query: 488 PKRASQIP*AVHLSKEDDVRRYV--VQRVLPXKEGKXNAK 601
PKRAS+I +LSK+DDVR+YV +R K GK +K
Sbjct: 137 PKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKVSK 176
>04_04_0909 -
29312875-29313135,29313235-29313556,29313676-29313923,
29314032-29314259
Length = 352
Score = 31.9 bits (69), Expect = 0.74
Identities = 29/91 (31%), Positives = 42/91 (46%)
Frame = +3
Query: 288 DKQPCSSSDVKGPLMLQTAPRWREKT*ISSWMYC*RQSLGLGSCYCAQGCPGNSWID*WK 467
++ C S D K + L T+ R + +S+W R L L CY P S+ID W
Sbjct: 104 ERLKCYSDDPKKAIRLSTSFNVRTEK-VSNW----RDFLRL-HCY-----PLESFIDQWP 152
Query: 468 CTPPSRSQNVLPKSRKLFTLAKKMMYVVMSS 560
PPS Q V SR+ LA +++ + S
Sbjct: 153 SNPPSFRQVVGTYSREARALALRLLEAISES 183
>01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 29.5 bits (63), Expect = 4.0
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +3
Query: 426 AQGCPGNSWID*WKCTPPSRSQNVLPKS--RKLFTLAKKMMYVVMSSNACS 572
A+GCP N+ D SRS P S +K++ L+ + ++N CS
Sbjct: 1641 ARGCPSNTLKDGRSVRSKSRSPTTTPSSSWKKVYWLSVDYLVAARAANRCS 1691
>02_05_0956 - 33064104-33066425
Length = 773
Score = 28.7 bits (61), Expect = 6.9
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -1
Query: 571 EHALDDITTYIIFFAKVNSLRDL-GSTFWDLDGGVHFHQSIQE-FPGHPCAQ*QEPRPR 401
EHA DD++TYII A V++ S D H+ +Q P H EP PR
Sbjct: 26 EHATDDVSTYIIHVAHVHATPPTHASQCMDQHAIAHYTSFLQGILPSHL----SEPTPR 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,810,483
Number of Sequences: 37544
Number of extensions: 461686
Number of successful extensions: 1248
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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