Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_B24
         (928 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   217   7e-57
U40421-1|AAA81437.2|  178|Caenorhabditis elegans Helix loop heli...    29   6.2  
AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical...    29   6.2  
AF037063-1|AAC26105.1|  178|Caenorhabditis elegans twist protein.      29   6.2  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  217 bits (531), Expect = 7e-57
 Identities = 99/136 (72%), Positives = 115/136 (84%)
 Frame = +1

Query: 85  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 264
           M+LN +YPATG QK FEV +E KLR+F+EKRM  EV  D LGDEWKGYV+R+ GGNDKQG
Sbjct: 1   MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60

Query: 265 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 444
           FPMKQG+LTN RVRLL+ KG SCYR R++GERKRKSVRGCIVDAN+S L+LVIV+KG  E
Sbjct: 61  FPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGE 120

Query: 445 IPGLTDGNVPRRLGPK 492
           I GLTD  +PR+LGPK
Sbjct: 121 IEGLTDSVLPRKLGPK 136



 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +2

Query: 488 PKRASQIP*AVHLSKEDDVRRYVV 559
           PKRAS+I    +L+K DDV +YV+
Sbjct: 135 PKRASKIRKLFNLTKHDDVTKYVI 158


>U40421-1|AAA81437.2|  178|Caenorhabditis elegans Helix loop helix
           protein 8 protein.
          Length = 178

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 790 PXAVPXHCLIPQPLXXSAP 846
           P ++P HCL+PQP   + P
Sbjct: 130 PSSIPPHCLMPQPWYQTCP 148


>AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical
           protein F40G9.1 protein.
          Length = 636

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +1

Query: 103 YPATGCQKLFEVVDEHK---LRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 261
           Y   G  ++FE+  E K    RIF EK +   +   ++ ++     L++ G NDK+
Sbjct: 6   YLHVGLNRIFEIAKEKKNGKFRIFLEKNVKNVIFLQEIFEKSLFLCLKINGSNDKK 61


>AF037063-1|AAC26105.1|  178|Caenorhabditis elegans twist protein.
          Length = 178

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 790 PXAVPXHCLIPQPLXXSAP 846
           P ++P HCL+PQP   + P
Sbjct: 130 PSSIPPHCLMPQPWYQTCP 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,300,459
Number of Sequences: 27780
Number of extensions: 351590
Number of successful extensions: 808
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)