Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_B23
         (937 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    33   0.058
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.31 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   5.0  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    27   5.0  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 33.1 bits (72), Expect = 0.058
 Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
 Frame = +3

Query: 645  SACXPPPRPXXIXXXVXXXTX--PCXPPXRXXAPAXXPSSXXPPXPAPLLXXPAXPPXS 815
            S   P P+P      V   +   P   P     P   PSS  PP P P    P  PP S
Sbjct: 1137 SGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPS 1195



 Score = 31.5 bits (68), Expect = 0.18
 Identities = 18/59 (30%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
 Frame = +3

Query: 645  SACXPPPRPXXIXXXVXXXTX--PCXPPXRXXAPAXXPSSXXPPXPAPLLXXPAXPPXS 815
            S   P P+P      V   +   P  P      P   P S  PP P P +  P  PP S
Sbjct: 1156 SGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPS 1214



 Score = 29.9 bits (64), Expect = 0.54
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = +3

Query: 708  PCXPPXRXXAPAXXPSSXXPPXPAPLLXXPAXPPXS 815
            P  PP     P   PS+  PP P P    P  P  S
Sbjct: 1208 PPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 17/57 (29%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
 Frame = +3

Query: 648  ACXPPPRPXXIXXXVXXXTX-PCXPPXRXXAPAXXPSSXXPPXPAPLLXXPAXPPXS 815
            A  P P+P      V   +  P  P     AP     S  PP P P +  P  P  S
Sbjct: 1100 AAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPS 1156



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +3

Query: 708  PCXPPXRXXAPAXXPSSXXPPXPAPLLXXPAXPP 809
            P  PP     P   PS   PP P P    P   P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
 Frame = +3

Query: 645  SACXPPPRPXXIXXXVXXXTX-PCXPPXRXXAPAXXPSSXXPPXPAPLLXXPAXPPXS 815
            SA  P P P      +   +  P  P      P   PS   PP P P +  P  P  S
Sbjct: 1061 SAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPS 1118



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
 Frame = +3

Query: 645  SACXPPPRPXXIXXXVXXXTX-PCXPPXRXXAPAXXPSSXXPPXPAPLLXXPAXP 806
            S   P P+P      V   +  P  P      P   P S  PP P P    P  P
Sbjct: 1176 SGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
 Frame = +3

Query: 645  SACXPPPRPXX-IXXXVXXXTXPCXP-PXRXXAPAXXPSSXXPPXPAPLLXXPA 800
            S   P P+P   +       T P  P P     P   P++  PP PAP    P+
Sbjct: 1195 SEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPS 1248


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +3

Query: 708 PCXPPXRXXAPAXXPSSXXPPXPAPLLXXPAXPP 809
           P  PP     P   P+    P PAP++  P  PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/46 (32%), Positives = 17/46 (36%)
 Frame = +3

Query: 645  SACXPPPRPXXIXXXVXXXTXPCXPPXRXXAPAXXPSSXXPPXPAP 782
            SA  PPP P  +         P  PP     P   P+S  P  P P
Sbjct: 1703 SAPTPPPPPMSVPPPPSAPPMPAGPP--SAPPPPLPASSAPSVPNP 1746


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 256 LGQHDEGAVVEVPQPL*TKDAWK 324
           L  H++G+++E P+PL    +WK
Sbjct: 137 LNCHEQGSLIEEPRPLFLDPSWK 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,192,041
Number of Sequences: 5004
Number of extensions: 35462
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)