Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_B23
         (937 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    34   0.13 
Z74046-1|CAA98556.2|  178|Caenorhabditis elegans Hypothetical pr...    33   0.22 
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    32   0.51 
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    31   0.90 
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    31   1.6  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    30   2.1  
U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z69658-1|CAA93481.1|  418|Caenorhabditis elegans Hypothetical pr...    29   6.3  
AL132876-21|CAD21671.1|  418|Caenorhabditis elegans Hypothetical...    29   6.3  
AC006638-8|AAK85487.2|  644|Caenorhabditis elegans Hypothetical ...    28   8.3  

>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 18/60 (30%), Positives = 20/60 (33%)
 Frame = +3

Query: 630 CGTLXSACXPPPRPXXIXXXVXXXTXPCXPPXRXXAPAXXPSSXXPPXPAPLLXXPAXPP 809
           C      C PPP P      +     P  PP     P   P    PP P P +  P  PP
Sbjct: 23  CSMGPPPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCP--PPPPPPPPPMCPPPPPP 80


>Z74046-1|CAA98556.2|  178|Caenorhabditis elegans Hypothetical
           protein ZC116.1 protein.
          Length = 178

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 90  LVLCGLLAAVSAAPQYYHGSSHWPYHHYDPFSSL 191
           L LC LLA  SA   YY  S + PY++Y P +++
Sbjct: 5   LALCSLLAVASAQYLYYPTSYYTPYYYYYPTAAV 38


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
 Frame = +3

Query: 657  PPPRPXXIXXXVXXXTXPCXPPXRXXAPAXXPSSXXPPXP--APLLXXPAXPP 809
            PPP P            P  PP    AP   P    PP P  +P +  P  PP
Sbjct: 1342 PPPPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLPVPPPPPLFSPSMILPPPPP 1394


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 31.5 bits (68), Expect = 0.90
 Identities = 16/60 (26%), Positives = 19/60 (31%)
 Frame = +3

Query: 630 CGTLXSACXPPPRPXXIXXXVXXXTXPCXPPXRXXAPAXXPSSXXPPXPAPLLXXPAXPP 809
           CG   +    P  P      +      C PP    A    P    PP P P +  P  PP
Sbjct: 27  CGGCPTPMCQPRMPCAAPMPMPMPMPVCPPPPPCPAQFCPPPPICPPPPPPPMPCPPPPP 86


>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
           protein Y48G9A.4 protein.
          Length = 1115

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
 Frame = +3

Query: 657 PPPRPXXIXXXVXXXTXPCXPPXRXXAPAXXPSSXXP-PXPAPLLXXPAXPP 809
           PPP P            P  PP     P     +  P P P P+L  P  PP
Sbjct: 542 PPPPPIAGLLAANGTNVPIPPPPPPPLPQNLSGAPPPPPPPPPMLGGPPPPP 593


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/51 (33%), Positives = 18/51 (35%)
 Frame = +3

Query: 657 PPPRPXXIXXXVXXXTXPCXPPXRXXAPAXXPSSXXPPXPAPLLXXPAXPP 809
           PPP P      V     P  P  +   PA  P    PP P P    P  PP
Sbjct: 97  PPPAPYP-QHAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPPP 146


>U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical
           protein R144.4a protein.
          Length = 360

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 21/83 (25%), Positives = 27/83 (32%), Gaps = 1/83 (1%)
 Frame = +3

Query: 552 RPVXEPXEXXSTXVXRXXXXFXXEXTCGTLXSACXPPPRPXXIXXXVXXXTXPCXPPXRX 731
           RP   P    +  + +    F       TL  A  PPPR           +    PP   
Sbjct: 235 RPAAPPPPVPTPSIAQMSSRFQSPAISRTLDDAPPPPPRIASKTSVAPTSSRAPLPPSSS 294

Query: 732 XAPAXXPS-SXXPPXPAPLLXXP 797
            AP+   S +  PP P P    P
Sbjct: 295 FAPSISASPAPAPPPPPPQAASP 317


>U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical
           protein R144.4b protein.
          Length = 362

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 21/83 (25%), Positives = 27/83 (32%), Gaps = 1/83 (1%)
 Frame = +3

Query: 552 RPVXEPXEXXSTXVXRXXXXFXXEXTCGTLXSACXPPPRPXXIXXXVXXXTXPCXPPXRX 731
           RP   P    +  + +    F       TL  A  PPPR           +    PP   
Sbjct: 237 RPAAPPPPVPTPSIAQMSSRFQSPAISRTLDDAPPPPPRIASKTSVAPTSSRAPLPPSSS 296

Query: 732 XAPAXXPS-SXXPPXPAPLLXXP 797
            AP+   S +  PP P P    P
Sbjct: 297 FAPSISASPAPAPPPPPPQAASP 319


>Z69658-1|CAA93481.1|  418|Caenorhabditis elegans Hypothetical
           protein C36H8.1 protein.
          Length = 418

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/51 (31%), Positives = 19/51 (37%)
 Frame = +3

Query: 657 PPPRPXXIXXXVXXXTXPCXPPXRXXAPAXXPSSXXPPXPAPLLXXPAXPP 809
           PPP P  +   V     P   P    AP   P+    P PAP+      PP
Sbjct: 196 PPPPPAPMPVPVEKAPEPVPAPVEQIAP--PPAPVQDPAPAPVEPSDPAPP 244


>AL132876-21|CAD21671.1|  418|Caenorhabditis elegans Hypothetical
           protein Y105E8A.25 protein.
          Length = 418

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 108 LAAVSAAPQYYHGSSHWPYHHYDPFSS 188
           L A+S   ++   S H PY+HY P SS
Sbjct: 181 LPAISEESEHEQQSIHIPYNHYPPHSS 207


>AC006638-8|AAK85487.2|  644|Caenorhabditis elegans Hypothetical
           protein F41G4.7 protein.
          Length = 644

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 217 HSLWSNLXQRNATLGQH--DEGAVVEVPQPL*TKDAWKATSIRY 342
           H+L   + Q  A++ QH    GA  E+P+P+ T     A+S+RY
Sbjct: 305 HALQGPVAQITASVDQHFIRVGAEPEMPRPIWTSTRLTASSLRY 348


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,721,023
Number of Sequences: 27780
Number of extensions: 223347
Number of successful extensions: 811
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)