Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_B21
         (896 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family ...    29   6.0  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    28   7.9  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   7.9  

>AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family
           protein 31 protein.
          Length = 747

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 388 YILKLXSRLNNTSIYGAXFKYHFPIALAEXRTSIAGPALTMP 263
           ++L L   L   S Y    K HFP       TS+ GPA+ +P
Sbjct: 612 HLLNLSHHLCRFSEYNLFVKAHFPRGSYGSLTSMTGPAVEIP 653


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 29/120 (24%), Positives = 31/120 (25%)
 Frame = +1

Query: 535 PXXPXXPPXXXVPGPXXXLXXGXXGSXPXXXLXXFGPPPXTMPXXNXXIXXIXXPXAXXV 714
           P  P  PP      P      G     P        PPP   P           P    +
Sbjct: 261 PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRT-------PGPPGM 313

Query: 715 PXIXXXNPSXPPXXXFHVSGSGXAXXXFXPPSXXXPXPXXRPXXXXXPSXXPXXXPXPXP 894
           P +    P  PP   F   G G       PP    P     P     PS  P   P P P
Sbjct: 314 PGM----PPPPPPSRFGPPGMGGMPPP-PPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPP 368


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +3

Query: 513 FCT*FPXXXXPPPXPXPPRPXAPDXP 590
           FC   P    PPP P PP P  P  P
Sbjct: 55  FCP--PPPMCPPPPPPPPPPMCPPPP 78


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 29/120 (24%), Positives = 31/120 (25%)
 Frame = +1

Query: 535 PXXPXXPPXXXVPGPXXXLXXGXXGSXPXXXLXXFGPPPXTMPXXNXXIXXIXXPXAXXV 714
           P  P  PP      P      G     P        PPP   P           P    +
Sbjct: 271 PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRT-------PGPPGM 323

Query: 715 PXIXXXNPSXPPXXXFHVSGSGXAXXXFXPPSXXXPXPXXRPXXXXXPSXXPXXXPXPXP 894
           P +    P  PP   F   G G       PP    P     P     PS  P   P P P
Sbjct: 324 PGM----PPPPPPSRFGPPGMGGMPPP-PPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPP 378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,435,489
Number of Sequences: 27780
Number of extensions: 170972
Number of successful extensions: 996
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)