Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_B19
(1360 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.32
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.5
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 2.5
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 28 2.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 3.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 23 6.3
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 7.9
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.7 bits (61), Expect = 2.0
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +2
Query: 26 PXPXPPPPPPP 58
P P PPPPPPP
Sbjct: 234 PLPAPPPPPPP 244
Score = 26.6 bits (56), Expect = 7.9
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3
Query: 24 PXXPXPPPPPPPXP 65
P PPPPPPP P
Sbjct: 184 PSDYNPPPPPPPPP 197
Score = 25.4 bits (53), Expect(2) = 0.32
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 33 PXPPPPPPPXP 65
P P PPPPP P
Sbjct: 234 PLPAPPPPPPP 244
Score = 24.2 bits (50), Expect(2) = 0.32
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +3
Query: 21 PPXXPXPPPPPPP 59
P PPPPPPP
Sbjct: 184 PSDYNPPPPPPPP 196
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.1 bits (62), Expect = 1.5
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 26 PXPXPPPPPPPXXXXXXXXXXXPPP 100
P PPPPPPP PPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 29.1 bits (62), Expect = 1.5
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 26 PXPXPPPPPPPXXXXXXXXXXXPPP 100
P PPPPPPP PPP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 28.3 bits (60), Expect = 2.6
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3
Query: 21 PPXXPXPPPPPP 56
PP P PPPPPP
Sbjct: 5 PPGNPPPPPPPP 16
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.3 bits (60), Expect = 2.6
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +2
Query: 38 PPPPPPPXXXXXXXXXXXPPPXSL 109
PPPPPPP PPP ++
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAV 785
Score = 27.9 bits (59), Expect = 3.4
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 38 PPPPPPPXXXXXXXXXXXPPP 100
PPPPPPP PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +2
Query: 32 PXPPPPPPPXXXXXXXXXXXPPP 100
P PPPPPPP P P
Sbjct: 775 PPPPPPPPPAVSAGGSRYYAPAP 797
Score = 26.6 bits (56), Expect = 7.9
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +2
Query: 32 PXPPPPPPPXXXXXXXXXXXPPP 100
P PPPPPP PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
Score = 23.4 bits (48), Expect(2) = 2.5
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2
Query: 821 PPPPPXPP 844
PPPPP PP
Sbjct: 761 PPPPPPPP 768
Score = 23.0 bits (47), Expect(2) = 2.5
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 824 PPPPXPPXP 850
PPPP PP P
Sbjct: 775 PPPPPPPPP 783
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 28.3 bits (60), Expect = 2.6
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3
Query: 24 PXXPXPPPPPPP 59
P P PPPPPPP
Sbjct: 942 PAFPPPPPPPPP 953
Score = 23.4 bits (48), Expect(2) = 3.2
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2
Query: 821 PPPPPXPP 844
PPPPP PP
Sbjct: 946 PPPPPPPP 953
Score = 22.6 bits (46), Expect(2) = 3.2
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 812 PXXPPPPPXP 841
P PPPPP P
Sbjct: 905 PTPPPPPPLP 914
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 3.4
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 3 PXXXXXPPXXPXPPPPPPPXP 65
P PP P PPP P P P
Sbjct: 464 PAAPPLPPAAPAPPPAPAPAP 484
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 22.6 bits (46), Expect(2) = 6.3
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 812 PXXPPPPPXP 841
P PPPPP P
Sbjct: 3 PAPPPPPPAP 12
Score = 22.6 bits (46), Expect(2) = 6.3
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 821 PPPPPXPPXP 850
PPPPP P P
Sbjct: 5 PPPPPPAPAP 14
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 7.9
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 806 AGPXXPPPPPXPPXPQ 853
A P PPPP PP P+
Sbjct: 216 ASPVKKPPPPAPPKPR 231
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,382,302
Number of Sequences: 5004
Number of extensions: 13889
Number of successful extensions: 424
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 749166106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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