Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_B18
(995 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1153 - 28047125-28047751 31 1.9
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 30 2.5
06_01_0178 + 1386981-1387505 30 2.5
03_05_0571 - 25713519-25714064,25714673-25714804 30 2.5
02_04_0413 + 22681957-22682035,22682253-22682788 30 3.3
08_01_0193 + 1599970-1600503,1601488-1601919,1602010-1602147,160... 29 4.4
03_02_0765 + 11000724-11002496 29 4.4
03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,177... 29 4.4
10_03_0023 - 7151465-7152111,7152222-7152405 24 5.4
07_01_0080 + 587674-588510 29 5.8
04_04_1641 + 34993807-34994589,34994924-34995022,34995521-349956... 29 5.8
12_01_0292 + 2193309-2193338,2193565-2193640,2193744-2195203,219... 29 7.6
08_01_0374 + 3301301-3301521,3301723-3301852,3301895-3301903,330... 29 7.6
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 29 7.6
03_01_0515 - 3864796-3865425 29 7.6
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 29 7.6
01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871 29 7.6
>06_03_1153 - 28047125-28047751
Length = 208
Score = 30.7 bits (66), Expect = 1.9
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +1
Query: 691 PXLXPPPPXPPCXXSPPRXS 750
P L PPPP PP SPP S
Sbjct: 18 PPLSPPPPPPPIFYSPPDVS 37
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 30.3 bits (65), Expect = 2.5
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 886 PXPXCAXVPXPPPLGXXPXPXPXPCPLXS 972
P P A P PPPL P P P PL S
Sbjct: 1162 PSPPPATPPPPPPLSPSLPPPPPPPPLPS 1190
Score = 28.7 bits (61), Expect = 7.6
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 892 PXCAXVPXPPPLGXXPXPXPXPCPL 966
P P PPPL P P P P PL
Sbjct: 1177 PSLPPPPPPPPLPSGPPPQPAPPPL 1201
Score = 28.7 bits (61), Expect = 7.6
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 691 PXLXPPPPXPPCXXSPP 741
P L PPPP PP PP
Sbjct: 1177 PSLPPPPPPPPLPSGPP 1193
>06_01_0178 + 1386981-1387505
Length = 174
Score = 30.3 bits (65), Expect = 2.5
Identities = 17/43 (39%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = -3
Query: 993 GXPXDXXGXQRAG-GGXGXRXXAEGGGXXHPSAXGGGEAXXXG 868
G P G R G GG G R A GGG GGG G
Sbjct: 13 GEPGQPGGRGRGGRGGRGGRGGASGGGGGGGGGGGGGGGGGAG 55
>03_05_0571 - 25713519-25714064,25714673-25714804
Length = 225
Score = 30.3 bits (65), Expect = 2.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 966 QRAGGGXGXRXXAEGGGXXHPSAXGGG 886
+R GGG G +G G PSA GGG
Sbjct: 146 RRGGGGVGDGAVEQGDGCDSPSAAGGG 172
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 29.9 bits (64), Expect = 3.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 703 PPPPXPPCXXSPPRXSPC 756
PPPP PPC P PC
Sbjct: 157 PPPPSPPCQHECPPTPPC 174
>08_01_0193 +
1599970-1600503,1601488-1601919,1602010-1602147,
1602532-1602600
Length = 390
Score = 29.5 bits (63), Expect = 4.4
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +1
Query: 703 PPPPXPPCXXSPPRXSP 753
PPPP PP PPR SP
Sbjct: 19 PPPPPPPPPPLPPRGSP 35
>03_02_0765 + 11000724-11002496
Length = 590
Score = 29.5 bits (63), Expect = 4.4
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -3
Query: 972 GXQRAGGGXGXRXXAEGGGXXHPSAXGGGEA 880
G AGGG G A GGG A GG EA
Sbjct: 444 GGAGAGGGGGLGGGAGGGGGLDGGAGGGAEA 474
>03_01_0224 -
1771582-1771727,1771855-1771980,1772489-1772517,
1772689-1772747,1772816-1772929,1773030-1773238,
1773347-1774087,1775678-1776238,1776295-1776419,
1778187-1778317,1779020-1779178,1779471-1779728,
1780140-1780164,1780531-1780592,1780944-1781003,
1781112-1781219,1781703-1781838,1781880-1781929,
1782024-1782096,1782209-1782345,1782441-1782527,
1782624-1782721,1783259-1783369,1783685-1783769,
1783880-1783969
Length = 1259
Score = 29.5 bits (63), Expect = 4.4
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +1
Query: 691 PXLXPPPPXPPCXXSPPRXSPC 756
P + PPPP PP P SPC
Sbjct: 643 PKVIPPPPLPPLLVLLPPTSPC 664
>10_03_0023 - 7151465-7152111,7152222-7152405
Length = 276
Score = 24.2 bits (50), Expect(2) = 5.4
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +1
Query: 691 PXLXPPPPXPP 723
P L PPPP PP
Sbjct: 233 PLLNPPPPPPP 243
Score = 23.4 bits (48), Expect(2) = 5.4
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +1
Query: 703 PPPPXPPCXXSPP 741
PPPP PP PP
Sbjct: 238 PPPPPPPPSLLPP 250
>07_01_0080 + 587674-588510
Length = 278
Score = 29.1 bits (62), Expect = 5.8
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 886 PXPXCAXVPXPPPLGXXPXPXPXPCPL 966
P P + P PPP P P P P PL
Sbjct: 96 PPPPSSGSPPPPPPPPPPPPPPPPPPL 122
>04_04_1641 +
34993807-34994589,34994924-34995022,34995521-34995648,
34996095-34996235,34996456-34996542,34996627-34996780,
34998569-34998628,34999019-34999447,34999524-34999819,
35000278-35000407,35000690-35001187
Length = 934
Score = 29.1 bits (62), Expect = 5.8
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +1
Query: 886 PXPXCAXVPXPPPLGXXPXPXPXPCPLXS 972
P P P PPP P P P P PL S
Sbjct: 41 PPPSPVPSPAPPPPPHRPSPSPPPNPLSS 69
>12_01_0292 +
2193309-2193338,2193565-2193640,2193744-2195203,
2195479-2195505,2195794-2196024,2196523-2196692,
2197278-2197421,2198036-2198083,2198503-2198566
Length = 749
Score = 28.7 bits (61), Expect = 7.6
Identities = 16/42 (38%), Positives = 18/42 (42%)
Frame = -3
Query: 993 GXPXDXXGXQRAGGGXGXRXXAEGGGXXHPSAXGGGEAXXXG 868
G D G Q GGG G GGG + +A GGG G
Sbjct: 280 GGKKDAGGKQNQGGGGGNGKNGGGGGQPN-NAKGGGAPNGGG 320
>08_01_0374 +
3301301-3301521,3301723-3301852,3301895-3301903,
3302349-3302486,3302616-3302948,3303280-3303463,
3303647-3303819
Length = 395
Score = 28.7 bits (61), Expect = 7.6
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -3
Query: 957 GGGXGXRXXAEGGGXXHPSAXGGGEAXXXG 868
GGG GGG H GGGEA G
Sbjct: 5 GGGGHGHHGGGGGGHGHHGGIGGGEAQIKG 34
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 28.7 bits (61), Expect = 7.6
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 703 PPPPXPPCXXSPPRXSP 753
PPPP PP PPR P
Sbjct: 305 PPPPPPPLANGPPRSIP 321
>03_01_0515 - 3864796-3865425
Length = 209
Score = 28.7 bits (61), Expect = 7.6
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 691 PXLXPPPPXPPCXXSPPRXSP 753
P L PPPP P PP SP
Sbjct: 86 PPLPPPPPPPAASPPPPPPSP 106
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 28.7 bits (61), Expect = 7.6
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 691 PXLXPPPPXPPCXXSPPRXSP 753
P L PPPP PP PP P
Sbjct: 349 PKLMPPPPPPPPPPPPPPPPP 369
Score = 28.7 bits (61), Expect = 7.6
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 691 PXLXPPPPXPPCXXSPPRXSP 753
P PPPP PP PPR P
Sbjct: 355 PPPPPPPPPPPPPPPPPRPPP 375
>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
Length = 177
Score = 28.7 bits (61), Expect = 7.6
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +1
Query: 886 PXPXCAXVPXPPPLGXXPXPXPXPCP 963
P P +P PPP P P P PCP
Sbjct: 133 PCPPPCPLPCPPPC---PLPCPPPCP 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,907,015
Number of Sequences: 37544
Number of extensions: 162268
Number of successful extensions: 5074
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4338
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2916970260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -