Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_B18
         (995 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    31   0.97 
AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen prot...    31   1.7  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U29380-1|AAA68740.1|  346|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AL132860-5|CAB60515.1|  798|Caenorhabditis elegans Hypothetical ...    26   4.4  
Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical pr...    29   5.2  
Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical pr...    28   9.0  
Z70309-6|CAA94360.1|  324|Caenorhabditis elegans Hypothetical pr...    28   9.0  
AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    28   9.0  

>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 31.5 bits (68), Expect = 0.97
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +1

Query: 886 PXPXC-AXVPXPPPLGXXPXPXPXPCPLXSXXVXRXS 993
           P P C A    PPP+   P P P PCP     + R S
Sbjct: 56  PPPPCPAQFCPPPPICPPPPPPPMPCPPPPPPMPRPS 92



 Score = 29.9 bits (64), Expect = 3.0
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +1

Query: 886 PXPXCAXVPXPPPLGXXPXPXPXPCPLXSXXVXRXS 993
           P P C   P PPP+   P P P P P     + R S
Sbjct: 67  PPPICPP-PPPPPMPCPPPPPPMPRPSCPCMMQRPS 101


>AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen protein
           51 protein.
          Length = 435

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -3

Query: 960 AGGGXGXRXXAEGGGXXHPSAXGGGEAXXXG 868
           AGGG G    A GGG  + +  GGG A   G
Sbjct: 319 AGGGGGGDFPAGGGGGGYSTGGGGGRADSGG 349


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 886 PXPXCAXVPXPPPLGXXPXPXPXPCPL 966
           P P    +P PPP+   P P P P  L
Sbjct: 97  PPPMMGGIPPPPPMFGAPPPPPPPSGL 123


>U29380-1|AAA68740.1|  346|Caenorhabditis elegans Hypothetical
           protein ZK546.7 protein.
          Length = 346

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 691 PXLXPPPPXPPCXXSPPR 744
           P L PPPP PP    PPR
Sbjct: 147 PKLPPPPPIPPPGPPPPR 164


>AL132860-5|CAB60515.1|  798|Caenorhabditis elegans Hypothetical
           protein Y56A3A.6 protein.
          Length = 798

 Score = 25.8 bits (54), Expect(2) = 4.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 703 PPPPXPPCXXSPPR 744
           PPPP PP   +PP+
Sbjct: 756 PPPPPPPLAAAPPQ 769



 Score = 21.8 bits (44), Expect(2) = 4.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 691 PXLXPPPPXPP 723
           P   PPPP PP
Sbjct: 750 PSSTPPPPPPP 760


>Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical
           protein T28C6.1 protein.
          Length = 281

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -1

Query: 755 QGEXRGGEXXQGGXGGGGXXXG 690
           QG  RGG+   GG GGGG   G
Sbjct: 236 QGGGRGGQQGPGGWGGGGRGGG 257


>Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical
           protein F45B8.3 protein.
          Length = 241

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 691 PXLXPPPPXPPCXXSPPRXSPC 756
           P   PPPP  PC    P  +PC
Sbjct: 88  PLPPPPPPASPCCGPSPVPAPC 109


>Z70309-6|CAA94360.1|  324|Caenorhabditis elegans Hypothetical
           protein R102.6 protein.
          Length = 324

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +1

Query: 886 PXPXCAXVPXPPPLGXXPXPXPXPCP 963
           P P C  +P PPP    P P P PCP
Sbjct: 246 PSPVC--MPPPPP----PCPMPIPCP 265


>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +1

Query: 886 PXPXCAXVPXPPPLGXXPXPXPXPCP 963
           P P CA  P PP     P P P P P
Sbjct: 32  PMPVCATPPCPPQYAPLP-PPPMPAP 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,725,971
Number of Sequences: 27780
Number of extensions: 79185
Number of successful extensions: 1613
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1389
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2605097262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)