Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_B17
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   205   8e-54
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   205   8e-54
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    42   2e-04

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  205 bits (500), Expect = 8e-54
 Identities = 94/141 (66%), Positives = 110/141 (78%)
 Frame = +2

Query: 68  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKVGVEAK 247
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+ K+GVEAK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 248 QPNSAIRKCVRVXLIKNGKKVTAFVPRDGCLNHIEXNDEVLVAGFGRKGHAVGDXPGVRF 427
           QPNSAIRKCVRV LIKNGKKVTAFVP DGCLN ++ NDEVL++GFGRKG A GD PGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRF 120

Query: 428 KXXXXXXXSLLPLYXEXXERP 490
           K        L  L+ E  E+P
Sbjct: 121 KVVKVAGVGLSALFHEKKEKP 141


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  205 bits (500), Expect = 8e-54
 Identities = 94/141 (66%), Positives = 110/141 (78%)
 Frame = +2

Query: 68  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKVGVEAK 247
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+ K+GVEAK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 248 QPNSAIRKCVRVXLIKNGKKVTAFVPRDGCLNHIEXNDEVLVAGFGRKGHAVGDXPGVRF 427
           QPNSAIRKCVRV LIKNGKKVTAFVP DGCLN ++ NDEVL++GFGRKG A GD PGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRF 120

Query: 428 KXXXXXXXSLLPLYXEXXERP 490
           K        L  L+ E  E+P
Sbjct: 121 KVVKVAGVGLSALFHEKKEKP 141


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 28/78 (35%), Positives = 44/78 (56%)
 Frame = +2

Query: 194 GASHAKGIVLXKVGVEAKQPNSAIRKCVRVXLIKNGKKVTAFVPRDGCLNHIEXNDEVLV 373
           G+   +G+      V+ K+PNSA+RK  RV L   G+ VTA++P  G  ++ + +  VL+
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLL 103

Query: 374 AGFGRKGHAVGDXPGVRF 427
            G GR      D PGV++
Sbjct: 104 RG-GR----AQDCPGVQY 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,546,446
Number of Sequences: 5004
Number of extensions: 43294
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)