Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_B17
         (912 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541...   216   2e-56
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347...   212   4e-55
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126...   141   8e-34
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746...    44   2e-04

>01_06_1253 -
           35753546-35753686,35753759-35753885,35753970-35754125,
           35754761-35754853,35757132-35757265,35757339-35757465,
           35757550-35757705,35758321-35758325
          Length = 312

 Score =  216 bits (528), Expect = 2e-56
 Identities = 98/148 (66%), Positives = 113/148 (76%)
 Frame = +2

Query: 53  CRAIQMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKV 232
           C ++ MGK RG+   RK   HRR QRWADK +KK+H+G +WK  PF G+SHAKGIVL K+
Sbjct: 166 CPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKI 224

Query: 233 GVEAKQPNSAIRKCVRVXLIKNGKKVTAFVPRDGCLNHIEXNDEVLVAGFGRKGHAVGDX 412
           G+EAKQPNSAIRKC RV L+KNGKK+ AFVP DGCLN IE NDEVL+AGFGRKGHAVGD 
Sbjct: 225 GIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDI 284

Query: 413 PGVRFKXXXXXXXSLLPLYXEXXERPXS 496
           PGVRFK       SLL L+ E  E+P S
Sbjct: 285 PGVRFKVVKVSGVSLLALFKEKKEKPRS 312



 Score =  210 bits (514), Expect = 9e-55
 Identities = 96/141 (68%), Positives = 109/141 (77%)
 Frame = +2

Query: 68  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKVGVEAK 247
           MGK RG+   RK   HRR QRWADK +KK+H+G +WK  PF G+SHAKGIVL K+G+EAK
Sbjct: 1   MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59

Query: 248 QPNSAIRKCVRVXLIKNGKKVTAFVPRDGCLNHIEXNDEVLVAGFGRKGHAVGDXPGVRF 427
           QPNSAIRKC RV L+KNGKK+ AFVP DGCLN IE NDEVL+AGFGRKGHAVGD PGVRF
Sbjct: 60  QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119

Query: 428 KXXXXXXXSLLPLYXEXXERP 490
           K       SLL L+ E  E+P
Sbjct: 120 KVVKVSGVSLLALFKEKKEKP 140


>03_06_0466 -
           34134138-34134278,34134355-34134481,34134558-34134713,
           34135831-34135835
          Length = 142

 Score =  212 bits (517), Expect = 4e-55
 Identities = 97/143 (67%), Positives = 110/143 (76%)
 Frame = +2

Query: 68  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKVGVEAK 247
           MGK RG+   RK   HRR QRWADK +KK+H+G +WK  PF G+SHAKGIVL K+G+EAK
Sbjct: 1   MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59

Query: 248 QPNSAIRKCVRVXLIKNGKKVTAFVPRDGCLNHIEXNDEVLVAGFGRKGHAVGDXPGVRF 427
           QPNSAIRKC RV L+KNGKK+ AFVP DGCLN IE NDEVL+AGFGRKGHAVGD PGVRF
Sbjct: 60  QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119

Query: 428 KXXXXXXXSLLPLYXEXXERPXS 496
           K       SLL L+ E  E+P S
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142


>10_06_0053 -
           10110617-10111271,10112023-10112417,10112565-10112650,
           10112973-10113021,10114164-10114290,10114372-10114526,
           10114730-10114948
          Length = 561

 Score =  141 bits (341), Expect = 8e-34
 Identities = 64/102 (62%), Positives = 75/102 (73%)
 Frame = +2

Query: 74  KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKVGVEAKQP 253
           K  G+   RK   HRR QRWADK +KK+H G +WK  PF G+SHAKGIVL K+G+EAKQP
Sbjct: 74  KTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 132

Query: 254 NSAIRKCVRVXLIKNGKKVTAFVPRDGCLNHIEXNDEVLVAG 379
           NSAI KC RV L+KNGKK+ AFVP DGCLN I+ N+   V G
Sbjct: 133 NSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174


>05_03_0026 +
           7466017-7466034,7466340-7466405,7466572-7466833,
           7467254-7467294
          Length = 128

 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 18/24 (75%), Positives = 21/24 (87%)
 Frame = +2

Query: 359 DEVLVAGFGRKGHAVGDXPGVRFK 430
           DEVL++GFG KGHAVGD  GVRF+
Sbjct: 67  DEVLISGFGHKGHAVGDIRGVRFE 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,448,538
Number of Sequences: 37544
Number of extensions: 395423
Number of successful extensions: 1365
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)