Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_B17
(912 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 231 3e-60
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 231 3e-60
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 231 3e-60
AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23 p... 88 4e-17
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 47 8e-05
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 47 8e-05
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 47 8e-05
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 47 8e-05
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 47 8e-05
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 47 8e-05
AL512625-9|CAH71809.1| 94|Homo sapiens family with sequence si... 32 3.3
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 231 bits (564), Expect = 3e-60
Identities = 110/143 (76%), Positives = 118/143 (82%)
Frame = +2
Query: 68 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKVGVEAK 247
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVL KVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 248 QPNSAIRKCVRVXLIKNGKKVTAFVPRDGCLNHIEXNDEVLVAGFGRKGHAVGDXPGVRF 427
QPNSAIRKCVRV LIKNGKK+TAFVP DGCLN IE NDEVLVAGFGRKGHAVGD PGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 428 KXXXXXXXSLLPLYXEXXERPXS 496
K SLL LY ERP S
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 231 bits (564), Expect = 3e-60
Identities = 110/143 (76%), Positives = 118/143 (82%)
Frame = +2
Query: 68 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKVGVEAK 247
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVL KVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 248 QPNSAIRKCVRVXLIKNGKKVTAFVPRDGCLNHIEXNDEVLVAGFGRKGHAVGDXPGVRF 427
QPNSAIRKCVRV LIKNGKK+TAFVP DGCLN IE NDEVLVAGFGRKGHAVGD PGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 428 KXXXXXXXSLLPLYXEXXERPXS 496
K SLL LY ERP S
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 231 bits (564), Expect = 3e-60
Identities = 110/143 (76%), Positives = 118/143 (82%)
Frame = +2
Query: 68 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLXKVGVEAK 247
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVL KVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 248 QPNSAIRKCVRVXLIKNGKKVTAFVPRDGCLNHIEXNDEVLVAGFGRKGHAVGDXPGVRF 427
QPNSAIRKCVRV LIKNGKK+TAFVP DGCLN IE NDEVLVAGFGRKGHAVGD PGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 428 KXXXXXXXSLLPLYXEXXERPXS 496
K SLL LY ERP S
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23
protein.
Length = 59
Score = 88.2 bits (209), Expect = 4e-17
Identities = 42/58 (72%), Positives = 42/58 (72%)
Frame = +2
Query: 317 FVPRDGCLNHIEXNDEVLVAGFGRKGHAVGDXPGVRFKXXXXXXXSLLPLYXEXXERP 490
FVP DGCLN IE NDEVLVAGFGRKGHAVGD PGVRFK SLL LY ERP
Sbjct: 1 FVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERP 58
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 47.2 bits (107), Expect = 8e-05
Identities = 32/83 (38%), Positives = 44/83 (53%)
Frame = +2
Query: 176 KANPFGGASHAKGIVLXKVGVEAKQPNSAIRKCVRVXLIKNGKKVTAFVPRDGCLNHIEX 355
K P G KG+VL + K+PNSA RKC RV L G++ F+P +G + ++
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 356 NDEVLVAGFGRKGHAVGDXPGVR 424
+ VLV G GR D PGV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVK 122
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 47.2 bits (107), Expect = 8e-05
Identities = 32/83 (38%), Positives = 44/83 (53%)
Frame = +2
Query: 176 KANPFGGASHAKGIVLXKVGVEAKQPNSAIRKCVRVXLIKNGKKVTAFVPRDGCLNHIEX 355
K P G KG+VL + K+PNSA RKC RV L G++ F+P +G + ++
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 356 NDEVLVAGFGRKGHAVGDXPGVR 424
+ VLV G GR D PGV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVK 122
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 47.2 bits (107), Expect = 8e-05
Identities = 32/83 (38%), Positives = 44/83 (53%)
Frame = +2
Query: 176 KANPFGGASHAKGIVLXKVGVEAKQPNSAIRKCVRVXLIKNGKKVTAFVPRDGCLNHIEX 355
K P G KG+VL + K+PNSA RKC RV L G++ F+P +G + ++
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 356 NDEVLVAGFGRKGHAVGDXPGVR 424
+ VLV G GR D PGV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVK 122
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 47.2 bits (107), Expect = 8e-05
Identities = 32/83 (38%), Positives = 44/83 (53%)
Frame = +2
Query: 176 KANPFGGASHAKGIVLXKVGVEAKQPNSAIRKCVRVXLIKNGKKVTAFVPRDGCLNHIEX 355
K P G KG+VL + K+PNSA RKC RV L G++ F+P +G + ++
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 356 NDEVLVAGFGRKGHAVGDXPGVR 424
+ VLV G GR D PGV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVK 122
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 47.2 bits (107), Expect = 8e-05
Identities = 32/83 (38%), Positives = 44/83 (53%)
Frame = +2
Query: 176 KANPFGGASHAKGIVLXKVGVEAKQPNSAIRKCVRVXLIKNGKKVTAFVPRDGCLNHIEX 355
K P G KG+VL + K+PNSA RKC RV L G++ F+P +G + ++
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 356 NDEVLVAGFGRKGHAVGDXPGVR 424
+ VLV G GR D PGV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVK 122
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 47.2 bits (107), Expect = 8e-05
Identities = 32/83 (38%), Positives = 44/83 (53%)
Frame = +2
Query: 176 KANPFGGASHAKGIVLXKVGVEAKQPNSAIRKCVRVXLIKNGKKVTAFVPRDGCLNHIEX 355
K P G KG+VL + K+PNSA RKC RV L G++ F+P +G + ++
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 356 NDEVLVAGFGRKGHAVGDXPGVR 424
+ VLV G GR D PGV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVK 122
>AL512625-9|CAH71809.1| 94|Homo sapiens family with sequence
similarity 88, member B protein.
Length = 94
Score = 31.9 bits (69), Expect = 3.3
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -1
Query: 153 FLNSLSAHRCSRRWFTCLRAVRIPRG-LPIWIARQPNPNLKEFPI 22
F S H C+RRW LR VR R P + PNP + FP+
Sbjct: 23 FSTSRGGHHCARRW---LRRVRRSRSQTPSYQNLDPNPPIVRFPL 64
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,341,502
Number of Sequences: 237096
Number of extensions: 1900134
Number of successful extensions: 5920
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5176
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11825849886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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