Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_B16
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220...   171   9e-43
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597...    30   2.9  
04_03_1022 - 21778315-21779007                                         29   3.8  
03_01_0515 - 3864796-3865425                                           29   5.0  
10_08_0669 + 19742140-19742189,19742886-19742923,19744260-197444...    29   6.7  
04_04_1560 - 34432491-34432837,34433097-34433292                       28   8.8  
04_01_0411 + 5449769-5450662,5450753-5451382                           28   8.8  
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278...    28   8.8  

>03_04_0129 +
           17520753-17520842,17521651-17521741,17521887-17522070,
           17522149-17522224
          Length = 146

 Score =  171 bits (415), Expect = 9e-43
 Identities = 74/134 (55%), Positives = 103/134 (76%)
 Frame = +1

Query: 100 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 279
           TVKDV   + VK  +AHLK++GK+++PE +D+VKTARFKEL PYDPDW+Y R A+I R I
Sbjct: 8   TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKI 67

Query: 280 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILT 459
           Y+R  +GV    KI+GGR+RNG  P HFC+SSG+I+R  LQ L+ + +++    GGR++T
Sbjct: 68  YLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLIT 127

Query: 460 TQGRRDLDRIAAQV 501
           +QGRRDLD++A +V
Sbjct: 128 SQGRRDLDQVAGRV 141


>03_02_0155 -
           5974118-5974173,5974242-5974314,5974393-5974500,
           5975189-5976914,5977065-5977620,5978008-5978485
          Length = 998

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +1

Query: 793 PPPPAXXLCXXSXXXXGNVXPPXTXPPXPPXNXPP 897
           PPPP             +  PP + PP PP + PP
Sbjct: 71  PPPPRPPSFAPENALPPSSPPPPSPPPPPPSSPPP 105


>04_03_1022 - 21778315-21779007
          Length = 230

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +1

Query: 793 PPPPAXXLCXXSXXXXGNVXPPXTXPPXPPXNXPP 897
           PPPP             ++ PP   PP PP   PP
Sbjct: 16  PPPPPPATRARPPCSSAHLLPPPPPPPPPPPYVPP 50


>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +1

Query: 793 PPPPAXXLCXXSXXXXGNVXPPXTXPPXPPXNXPP 897
           PPPP+               PP   PP PP + PP
Sbjct: 74  PPPPSVTSSPPPPPLPPPPPPPAASPPPPPPSPPP 108


>10_08_0669 +
           19742140-19742189,19742886-19742923,19744260-19744448,
           19746402-19748188
          Length = 687

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = +1

Query: 355 SHFCRSSGSIARKALQSL-----EALKLVEKVQDGGRILTTQGRRDLDRIAAQVRLKAKX 519
           SH C S  S+ R+ LQS+     EA +L  + ++  R    Q + DLD +A ++ L  + 
Sbjct: 193 SHPCFSKNSLCRELLQSVAATLAEAAELGARCREPPRAGKLQMQSDLDALAGKLDLNLRD 252

Query: 520 XA 525
            A
Sbjct: 253 CA 254


>04_04_1560 - 34432491-34432837,34433097-34433292
          Length = 180

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 841 GNVXPPXTXPPXPPXNXPP 897
           G+  PP   PP PP N PP
Sbjct: 131 GHDAPPPASPPPPPSNAPP 149


>04_01_0411 + 5449769-5450662,5450753-5451382
          Length = 507

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
 Frame = +2

Query: 353 LHISAGHQAVLHARLCNRWRH*SLLR--KFRTVVAFSPHKVDETLTESLPRFV*RPSXXL 526
           LH+   H  V    L +++     LR  +  TVV  SP    E L +    F  RPS  +
Sbjct: 48  LHLLRSHPQVALRELASKYGPVMFLRMGQIDTVVVSSPAAAQEVLRDKDVMFASRPSLLV 107

Query: 527 SNKSLYXN 550
           S    Y N
Sbjct: 108 SEIFCYDN 115


>02_01_0385 +
           2783387-2783695,2784149-2785082,2785206-2785309,
           2785402-2785486,2785517-2787578,2787732-2787753,
           2788157-2788327,2791473-2791517,2792558-2793874,
           2793962-2794012,2794090-2794188,2794352-2794504,
           2794554-2794571
          Length = 1789

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 207 SCLYKIHVLRYLDFARFF*VS-SDSFNNLVLFNILYCDGTHL 85
           S +YK+ +LRYLD +     S S SFN+L+    L    T+L
Sbjct: 550 SSVYKLKLLRYLDASSLRISSFSKSFNHLLNLQALILSNTYL 591


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,036,784
Number of Sequences: 37544
Number of extensions: 383401
Number of successful extensions: 1857
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1571
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)