Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_B16
         (900 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...   162   3e-40
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...   162   3e-40
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    29   6.0  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    28   7.9  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    28   7.9  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    28   7.9  

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score =  162 bits (394), Expect = 3e-40
 Identities = 78/139 (56%), Positives = 100/139 (71%), Gaps = 1/139 (0%)
 Frame = +1

Query: 91  RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAIL 270
           R+ ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ 
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62

Query: 271 RHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-G 447
           RH+Y R P G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG G
Sbjct: 63  RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKG 121

Query: 448 RILTTQGRRDLDRIAAQVR 504
           RIL+ QGR+DLDRIA  +R
Sbjct: 122 RILSKQGRKDLDRIATSLR 140


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score =  162 bits (394), Expect = 3e-40
 Identities = 78/139 (56%), Positives = 100/139 (71%), Gaps = 1/139 (0%)
 Frame = +1

Query: 91  RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAIL 270
           R+ ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ 
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62

Query: 271 RHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-G 447
           RH+Y R P G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG G
Sbjct: 63  RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKG 121

Query: 448 RILTTQGRRDLDRIAAQVR 504
           RIL+ QGR+DLDRIA  +R
Sbjct: 122 RILSKQGRKDLDRIATSLR 140


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +1

Query: 793 PPPPAXXLCXXSXXXXGNVXPPXTXPPXPPXNXPP 897
           PPPP   +C         + PP   PP PP   PP
Sbjct: 46  PPPP---ICPPQFCPPPPMCPPPPPPPPPPMCPPP 77


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
 Frame = +1

Query: 793 PPPPAXXLCXXSXXXXGN-VXPPXTXPPXPPXNXPP 897
           PPP    L   S    G+   PP T  P PP   PP
Sbjct: 686 PPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPP 721


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
 Frame = +1

Query: 793 PPPPAXXLCXXSXXXXGN-VXPPXTXPPXPPXNXPP 897
           PPP    L   S    G+   PP T  P PP   PP
Sbjct: 686 PPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPP 721


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
 Frame = +1

Query: 793 PPPPAXXLCXXSXXXXGN-VXPPXTXPPXPPXNXPP 897
           PPP    L   S    G+   PP T  P PP   PP
Sbjct: 269 PPPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPP 304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,385,925
Number of Sequences: 27780
Number of extensions: 306085
Number of successful extensions: 940
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)