Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_B14
(902 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 91 2e-19
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 82 9e-17
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 75 1e-14
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 32 0.097
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 27 3.6
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 27 3.6
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 27 3.6
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 27 3.6
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 27 4.8
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 91.1 bits (216), Expect = 2e-19
Identities = 42/76 (55%), Positives = 58/76 (76%)
Frame = +2
Query: 131 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 310
+S +ELA YSALIL D+ + +T +K+ ++ KAA VDVEP W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60
Query: 311 NIGSGVGAAPAAGWSA 358
NIGSG GAAP AG +A
Sbjct: 61 NIGSGAGAAPVAGGAA 76
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 432 SDDDMGFGLFD 464
SD+DMGFGLFD
Sbjct: 99 SDEDMGFGLFD 109
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 82.2 bits (194), Expect = 9e-17
Identities = 40/73 (54%), Positives = 55/73 (75%)
Frame = +2
Query: 131 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 310
+S +ELA YSALIL D+ + +T +K+ ++ KAA VDVEP W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60
Query: 311 NIGSGVGAAPAAG 349
NIGS AAPAAG
Sbjct: 61 NIGS-AAAAPAAG 72
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 432 SDDDMGFGLFD 464
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 74.9 bits (176), Expect = 1e-14
Identities = 35/73 (47%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
Frame = +2
Query: 131 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 310
+S +ELA Y+ALIL D+ + +T +K+ ++ KA V+VEP W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLL 60
Query: 311 NIGS-GVGAAPAA 346
NIGS G +AP A
Sbjct: 61 NIGSAGAASAPTA 73
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 432 SDDDMGFGLFD 464
SD+DMGFGLFD
Sbjct: 99 SDEDMGFGLFD 109
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 32.3 bits (70), Expect = 0.097
Identities = 23/71 (32%), Positives = 32/71 (45%)
Frame = -3
Query: 351 HPAAGAAPTPEPMLVIRSRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTR 172
HP TPEP L + S +L P ++L N Y ST A T+ + S
Sbjct: 374 HPMLMNPSTPEPSLGVNSPSLRPLQSLNNVQNSYRVASTQA--PPPHPLRNYTSDAESIS 431
Query: 171 MRAE*THANSA 139
MR++ T A+ A
Sbjct: 432 MRSKSTQASDA 442
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 432 SDDDMGFGLFD 464
SD+DMGFGLFD
Sbjct: 302 SDEDMGFGLFD 312
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 432 SDDDMGFGLFD 464
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 432 SDDDMGFGLFD 464
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 432 SDDDMGFGLFD 464
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 26.6 bits (56), Expect = 4.8
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +2
Query: 113 RSKLKMVSKAELACVYSALILVD-DDV--AVTGEKISTILKAAAVDVEPYWPGLFAKALE 283
R+ L+ + E S L+L + DV A++ E+IS IL + +W AL
Sbjct: 103 RNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISKILNISKYK-SSHWRIFSVSALT 161
Query: 284 GINVRDLIT 310
G+N++D I+
Sbjct: 162 GLNIKDAIS 170
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,138,774
Number of Sequences: 5004
Number of extensions: 35865
Number of successful extensions: 105
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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